Protein

Protein accession
1VdBf [EnVhog]
Representative
ATmM
Source
EnVhog (cluster: phalp2_38353)
Protein name
1VdBf
Lysin probability
82%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MTQTPTVPTATYNKNNRLTDFLKESEGFRPEPYLDQAGLPTIGYGNRFYDDGTPVTMEDSAITEERATELLNNYVGQVESRISQMPGYDKLNPNQRDAIVSFGYNFGANFMDDKEGFGTMTKAINKNDVKGIQEAFPLYVNVEDKNDPRGYSESEGLVNRRNAEIDLFNEPYKITRQKPVSKYSPYVIDRYGY
Physico‐chemical
properties
protein length:193 AA
molecular weight:21993,1 Da
isoelectric point:4,78
hydropathy:-0,85
Representative Protein Details
Accession
ATmM
Protein name
ATmM
Sequence length
214 AA
Molecular weight
23937,24680 Da
Isoelectric point
7,74661
Sequence
MKISEKGLQLIKDLEGFRGAPYLDGGGVPTIGYGATHYLDNKRVTLDDKFISEKDADLLLRRMVPVYEREVQNLVKVPLNQNQYDAVVSFVYNIGGDQFLKSTFLKKLNSEDYSGAANEFPKWKFDNGIVIQGLVNRRKIEQDLFLKEIIKQEKQEMLNGYKTYIGIAISVVSALAAAFGKDWGIDWAGFEVAVTAAVGAIISVYGYLKKDPKV
Other Proteins in cluster: phalp2_38353
Total (incl. this protein): 19 Avg length: 199,4 Avg pI: 5,09
Protein ID Length (AA) pI
ATmM 214 7,74661
114VF 191 4,33081
1REFQ 200 4,59631
1TiOT 200 4,68049
28ZM6 199 4,68771
36cBD 213 4,83742
3GBHR 200 4,53430
3Ghzx 200 4,77473
3IEqk 202 4,44449
3L3Uk 199 4,75392
3L3Zn 213 5,03539
3Le77 199 4,50889
5ITq3 184 9,74087
8AQGv 189 4,71078
8EdJt 199 4,50889
8G22M 193 4,78229
8kjIf 199 4,88334
8ubEW 201 4,38430
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_34911
4lF8s
 21 53,1% 143 4.599E-45
2 phalp2_4451
31DIk
 4919 53,3% 150 3.305E-39
3 phalp2_28113
7zmZV
 50 49,3% 156 1.342E-31
4 phalp2_6830
8n5Jv
 121 51,6% 149 2.505E-31
5 phalp2_22738
7ZWXa
 59 47,4% 156 8.732E-31
6 phalp2_2632
6RhYr
 14867 55,4% 146 1.630E-30
7 phalp2_1787
2YvbE
 2 39,3% 145 7.359E-27
8 phalp2_30967
1cc13
 10 41,3% 145 1.371E-26
9 phalp2_26035
6XV4Z
 46 41,2% 148 3.487E-26
10 phalp2_32792
2snIK
 45 49,6% 145 3.487E-26

Domains

Domains
GH24
Representative sequence (used for alignment): ATmM (214 AA)
Member sequence: 1VdBf (193 AA)
1 214 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF00959

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

No tertiary structures available for this protein.

The structures below correspond to the cluster representative (ATmM) rather than this protein.
PDB ID
ATmM
Method AlphaFoldv2
Resolution 91.24
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50