Protein

Protein accession
A0A1X9SGQ2 [UniProt]
Representative
gdy7
Source
UniProt (cluster: phalp2_13958)
Protein name
Peptidase C51 domain-containing protein
Lysin probability
100%
PhaLP type
endolysin
Probability: 98% (predicted by ML model)
Protein sequence
MVQAPQQEPSFFENFQSGFQGGFQSGFSAGSGLVSRARQFVGQTAHQVGVRSTLWCSAFLRKLTGRDDVDDRALSWEKRPHIAPQVGAIVTMGRRGGGHVGVVSGFDKSGNPVVISGNGGGHRVTEHVYPRSRIRAWVSAS
Physico‐chemical
properties
protein length:141 AA
molecular weight:15153,8 Da
isoelectric point:11,06
hydropathy:-0,33
Representative Protein Details
Accession
gdy7
Protein name
gdy7
Sequence length
191 AA
Molecular weight
20918,75260 Da
Isoelectric point
11,49041
Sequence
MVRFIAILAALVLSITAAQARPRHHHHQHRHVVTSVADPGCNILFPCEGVTVSQRGQQIEHAMPFGKAQKTYRRAVERPVQWAGSSGLVDRARSYMGQTAAQVGVRRTLWCSAFLRHLTHARGVDDRAISWLSQPRTTARVGAIAVMRHHVGIVSGFDARGNPILVSGNHGRRVGEGVYSAHRVIAYVSAS
Other Proteins in cluster: phalp2_13958
Total (incl. this protein): 74 Avg length: 179,7 Avg pI: 10,99
Protein ID Length (AA) pI
gdy7 191 11,49041
13o3e 191 10,07275
15fNp 176 10,36118
167Rr 177 10,63549
16ImG 166 11,58685
19OeH 184 9,91435
1YffN 182 11,99997
1ieen 155 10,09564
1nUGA 175 9,90333
1oPcF 155 10,64774
1oZsQ 186 9,91538
1p03i 184 9,85614
20GY4 167 11,59710
27NnQ 184 9,74822
27y5r 184 9,74822
29aCf 201 11,22976
2E5EF 176 11,52110
3T2aj 185 11,77272
48SQB 184 9,85614
4DRfb 171 10,94520
4LYuP 190 11,03662
4LkAK 193 11,28437
4QnZi 203 11,09625
4YxmQ 197 10,85920
4d5bb 213 10,33314
4e5Ua 186 9,91454
4k0y9 134 11,27244
5BAME 188 11,02224
5Bn3Z 168 11,28940
5GNgW 196 11,99997
5nhUw 183 10,48876
5rCA4 215 10,18641
5zyGh 212 11,99997
6CDHc 167 11,04687
6DTSK 186 11,44103
6DYjk 169 11,51388
6DkfJ 202 11,10747
6Dlbl 124 10,54085
6Dm8a 205 11,45527
6DxSd 174 11,26174
6E2VF 164 11,17206
6EAIb 164 10,98317
6EBiO 172 11,40338
6F2Eq 174 11,56558
6F3cn 166 11,50962
6F4oI 169 11,23318
6GGoU 171 11,23318
6KEDo 216 11,21938
6KOh3 144 11,36051
6OeGL 144 11,47004
6Oeah 186 11,41247
6PAtB 195 11,68904
6PAuA 223 11,56455
6PqaN 221 11,39764
6QBjW 172 10,43416
6TKKy 180 11,34084
6tomP 171 11,42768
71ZzM 175 11,58434
729hE 180 11,36360
72xId 177 11,24298
7i89X 162 11,84821
7i8d3 141 11,89514
7y42 186 10,01260
7z275 183 11,41814
7z2xx 182 11,53934
7z441 148 10,75876
7zm36 204 10,99239
80LkD 180 10,59636
8b9aK 187 9,91828
TS5J 184 9,85614
aUXV 184 9,81449
fiq5 191 11,59201
jrlV 179 11,32099
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_34856
46M5C
 18 34,5% 214 3.880E-37
2 phalp2_37626
4dP1b
 31 24,3% 189 4.854E-13
3 phalp2_21337
1P0gw
 7 28,4% 151 7.662E-12
4 phalp2_27296
4g5f4
 2 26,3% 171 2.572E-06
5 phalp2_31791
4f16S
 3 21,9% 210 6.817E-05
6 phalp2_38017
5H1gM
 57 20,6% 174 7.258E-04

Domains

Domains [InterPro]
Disordered region
Unannotated
Representative sequence (used for alignment): gdy7 (191 AA)
Member sequence: A0A1X9SGQ2 (141 AA)
1 191 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated

Taxonomy

  Name Taxonomy ID Lineage
Phage Bradyrhizobium phage BDU-MI-1
[NCBI] 		1983459 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
CDS Source ID
[NCBI]
CDS Source
KY940711 [NCBI]
CDS location
range 44198 -> 44623
strand +
CDS
GTGGTTCAGGCTCCGCAGCAGGAGCCGTCGTTCTTCGAGAACTTCCAGTCCGGTTTCCAGGGCGGATTCCAGTCCGGGTTTTCGGCCGGCAGCGGCCTTGTGTCTCGCGCCCGTCAGTTCGTGGGCCAGACCGCCCACCAGGTCGGCGTCCGCAGCACCCTGTGGTGCTCGGCGTTCCTGCGCAAGCTGACGGGACGCGATGACGTCGATGATCGCGCCCTGTCCTGGGAGAAGCGACCGCACATCGCTCCGCAGGTCGGAGCCATCGTGACCATGGGCCGTCGCGGCGGCGGTCACGTCGGCGTCGTCTCGGGCTTCGACAAGTCCGGCAATCCTGTCGTGATCAGCGGAAACGGCGGCGGTCACCGCGTGACCGAGCACGTCTACCCGCGCAGCCGCATCCGCGCATGGGTGTCCGCATCATGA

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
upi000a31ba62_model
Method AlphaFold3 (non-commercial)
Resolution -
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50
The structures below correspond to the cluster representative (gdy7) rather than this protein.
PDB ID
gdy7
Method AlphaFoldv2
Resolution 73.68
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50