Protein

Protein accession
A0A646QWB6 [UniProt]
Representative
AVmF
Source
UniProt (cluster: phalp2_544)
Protein name
Putative lytic transglycosylase
Lysin probability
64%
PhaLP type
endolysin
Probability: 98% (predicted by ML model)
Protein sequence
MANFWDNDEVVPVQLPQATEEEPTQANFWDKDEVIPAVTPEAPVTSPRPKARPAQEDRVLAVNLPEDVAADSDFLTKVETVANNVGVTQEDLLRVIQFETAGSFAPDQISGTSSAVGLIQFMPTTAEDLGTTSRDLALLNRSDQMDFVEKYLTRFKGRMKDFGDLYMAVHFPAAVGKDDDYVVYAKDHKYKGRRQAYEANKGMDVDKDGKVTKAEAIARATGGN
Physico‐chemical
properties
protein length:224 AA
molecular weight:24691,2 Da
isoelectric point:4,62
hydropathy:-0,50
Representative Protein Details
Accession
AVmF
Protein name
AVmF
Sequence length
279 AA
Molecular weight
30742,31140 Da
Isoelectric point
4,97395
Sequence
MAGINLEGRATLVVEKERAQVVSTLKDMLELSRQSAEENAKAREAAGITESLAEPFVRDTGDMVRPEMRPVEMTEPEAPVQEQIQQSEGTEQAPVTSIRPVARPTEPEEDRVLPLFVPDDVQQDTGFMTSVETVSSNLGIPSEDLLRAMHFETGGTFSTSIKNPTGSATGLIQIIEPTAKSLGTSTAELAKMTREEQMVYVEKYLTPYKGRMKDFGDIYMAIHLPVAIGKSNDYVIYDNQTLRTRAYKQNKGLDANKDGKVTKGEAVTRASRDTKPKDT
Other Proteins in cluster: phalp2_544
Total (incl. this protein): 15 Avg length: 262,7 Avg pI: 4,92
Protein ID Length (AA) pI
AVmF 279 4,97395
28dYb 243 4,55999
2Gige 224 4,60301
2M0xR 287 4,55237
2eIx3 224 4,69004
2mq9C 253 4,80184
2wkOj 281 4,85714
4qY3C 224 4,62626
7Ej2F 281 5,38790
8CP57 281 5,10217
8FnSn 281 5,11019
8xTN2 281 5,05585
8xqZM 281 5,28628
AD6f 296 5,51090
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_22634
1VAZt
 1 36,3% 242 4.387E-43
2 phalp2_36417
T712
 4 41,3% 191 1.423E-39
3 phalp2_31970
4XiKL
 2 38,6% 194 2.782E-37
4 phalp2_14771
6U5Ok
 8 33,5% 179 2.547E-22
5 phalp2_29243
8CW9k
 34 25,5% 188 9.860E-08

Domains

Domains [InterPro]
Unannotated
Unannotated
Representative sequence (used for alignment): AVmF (279 AA)
Member sequence: A0A646QWB6 (224 AA)
1 279 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated

Taxonomy

  Name Taxonomy ID Lineage
Phage Roseobacter phage CRP-5
[NCBI] 		2559284 Zobellviridae > Veravirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
CDS Source ID
[NCBI]
CDS Source
MK613347 [NCBI]
CDS location
range 16233 -> 16907
strand -
CDS
ATGGCTAACTTTTGGGATAATGACGAGGTAGTTCCTGTCCAGTTACCTCAGGCAACAGAGGAAGAACCTACTCAGGCTAACTTCTGGGACAAAGATGAGGTAATACCTGCTGTCACACCAGAGGCTCCTGTAACATCCCCAAGGCCTAAGGCTAGACCAGCACAAGAGGACAGAGTTCTAGCCGTTAATTTACCAGAAGATGTAGCAGCAGACTCTGATTTCCTAACAAAGGTAGAAACGGTAGCCAATAATGTGGGCGTAACCCAAGAGGATCTCCTTAGGGTTATACAGTTTGAAACAGCAGGTAGCTTTGCTCCTGACCAAATCTCTGGTACATCTAGTGCTGTTGGTCTAATACAGTTTATGCCCACTACTGCTGAAGACCTCGGTACAACCTCTCGTGATCTAGCTCTCTTAAACAGATCAGATCAAATGGACTTCGTTGAGAAGTATCTAACACGATTTAAGGGACGTATGAAGGACTTTGGTGACCTGTACATGGCTGTCCATTTCCCTGCTGCTGTAGGAAAAGATGATGACTACGTAGTCTACGCCAAAGACCATAAGTATAAAGGTCGCAGACAGGCTTATGAGGCCAACAAGGGTATGGACGTAGACAAAGACGGTAAGGTGACAAAGGCAGAGGCTATTGCAAGAGCTACTGGAGGTAACTAA

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

No tertiary structures available for this protein.

The structures below correspond to the cluster representative (AVmF) rather than this protein.
PDB ID
AVmF
Method AlphaFoldv2
Resolution 74.96
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50