Protein

Protein accession
A0A3Q8HDD3 [UniProt]
Representative
yZyv
Source
UniProt (cluster: phalp2_32385)
Protein name
LysM peptidoglycan-binding domain-containing protein
Lysin probability
99%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MVDKLKFIETMAPYAQAHQEHFFPSITLAQTILESAWGESTLAKEANNYWGRKEDNPNVEAYVVNTQEADSDGNFYTIEARFRIYKDLDEGFKDHDTIMTRSPWYESYYKDALNAKSPKEQAEGLTGTYATDPGYANKLMNIIDAYDLTKYDTQPIRDTDGKPDNVAIMPDGTRIVFQ
Physico‐chemical
properties
protein length:178 AA
molecular weight:20360,3 Da
isoelectric point:4,61
hydropathy:-0,74
Representative Protein Details
Accession
yZyv
Protein name
yZyv
Sequence length
500 AA
Molecular weight
55228,44860 Da
Isoelectric point
4,93046
Sequence
MANSFIEQIAPLVQKYPSKIFNSITIAQACLESAWGQSDLARGGNNLFGIKASAPWTGPVFNKDSLEERSGVLKPENSDFRSYATIEESIADHASFFESTEYRKQYYAKVLNATTPEEQARALTGTYATDSRYGDKLINFINDYDLKQYDEAKPAVAPQVQGGYTTMPTILFVAGHGEQPNGGFDTGAIGNISLGEHRYMEQVFFPAIKNALPSGANVAFFSDHDCYAYGDIANQAAKYGSDTIVIECHYDAAGSSSATGGHVIVYKGFDPDEYDIKLRDALAETIGVFPYNHKGYKGISGRDDLANANRTANSGTNWRLIELGFGTNPDDADYLVNNVNELATAIVKHLLGATSGATGGTAEKQPTGWISKIENGIKRWWFRNEDGSYKKSEWYEEYGNEYYFDEEGWAAQDCVKEIKGKKYHFKPNCVMSTGWVEIDGKWYHFNGRDGYMETKTMVEGKDGRLYYLTEDGSMLTNTDVKVAEDGSLIESATGKPIGTI
Other Proteins in cluster: phalp2_32385
Total (incl. this protein): 16 Avg length: 452,4 Avg pI: 5,61
Protein ID Length (AA) pI
yZyv 500 4,93046
5VuRN 493 5,24530
6YZpx 499 5,41439
6Z38H 483 5,02294
6mBlR 483 5,04465
6u2kg 493 5,26257
70RgX 493 5,19596
7MKZR 496 5,13599
BIHD 485 4,93967
EEg0 485 4,94649
HCbR 483 4,96229
HLhQ 493 5,15589
KMWC 493 5,14088
A0A9E7TDL1 341 9,40112
A0AAE9GEH6 341 9,40112
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_11372
7BXB0
 3 27,8% 374 3.879E-59
2 phalp2_10054
7skiR
 4 24,0% 399 6.023E-51
3 phalp2_24803
725t1
 19 34,8% 350 1.247E-40
4 phalp2_21977
7Oy50
 2 22,5% 386 5.532E-40
5 phalp2_36910
7zJeP
 42 31,4% 315 5.590E-26
6 phalp2_37214
234pK
 1 28,3% 356 6.702E-20
7 phalp2_11791
82p55
 1 27,5% 327 1.167E-13

Domains

Domains [InterPro]
GLUCO
Ami3
Choline_bind_3
Representative sequence (used for alignment): yZyv (500 AA)
Member sequence: A0A3Q8HDD3 (178 AA)
1 500 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF01520, PF01832, PF19127

Taxonomy

  Name Taxonomy ID Lineage
Phage Aerococcus phage vB_AviM_AVP
[NCBI] 		2495576 Herelleviridae >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
CDS Source ID
[NCBI]
CDS Source
MH729379 [NCBI]
CDS location
range 77409 -> 77945
strand +
CDS
ATGGTAGATAAATTAAAGTTTATTGAAACAATGGCACCATATGCTCAAGCTCACCAAGAGCATTTCTTTCCAAGTATCACGCTTGCTCAAACTATTTTAGAGTCTGCATGGGGAGAATCAACGTTAGCTAAAGAGGCTAATAACTACTGGGGTAGAAAAGAAGACAACCCTAATGTTGAAGCATATGTAGTGAACACTCAAGAGGCAGATAGTGATGGCAACTTTTATACTATTGAAGCTAGATTTAGAATCTATAAAGATTTAGATGAGGGCTTTAAGGACCATGATACAATTATGACTCGTTCACCATGGTACGAAAGTTACTATAAGGATGCACTTAATGCTAAGTCACCTAAAGAGCAGGCAGAGGGTCTTACAGGTACCTATGCTACTGACCCAGGGTATGCTAACAAGCTCATGAATATTATTGATGCTTATGACTTAACTAAGTATGACACCCAACCTATTAGGGATACTGATGGTAAACCTGACAACGTAGCTATTATGCCTGATGGTACAAGAATTGTATTTCAATAG

Gene Ontology

Description Category Evidence (source)
GO:0004040 amidase activity molecular function None (UniProt)

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

No tertiary structures available for this protein.

The structures below correspond to the cluster representative (yZyv) rather than this protein.
PDB ID
yZyv
Method AlphaFoldv2
Resolution 86.24
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50