Protein

Protein accession
Q2NPA7 [UniProt]
Representative
1bUPz
Source
UniProt (cluster: phalp2_2991)
Protein name
Lytic enzyme
Lysin probability
100%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MGSPEMSTETVAAGLGFSAEIALLLEAGCVRYGLTSPLEKSHFLAQVAHESGSGKWLEELASGKAYEGRKDLGNTQPGDGVRFKGRGLIQVTGRSNYARYSAWKYGDTRVVATPGMLAQLPDAVDAAFWYWTVARPQLKPLALADDVVGVTKAINGGTNGLDDRRAKLAQAKRLFGLSV
Physico‐chemical
properties
protein length:179 AA
molecular weight:19101,5 Da
isoelectric point:9,01
hydropathy:-0,18
Representative Protein Details
Accession
1bUPz
Protein name
1bUPz
Sequence length
110 AA
Molecular weight
12093,77420 Da
Isoelectric point
10,31515
Sequence
RKDLGNTQPGDGKRFKGRGLIQVTGRENYRTYSLWKYGDERAVLIPAMLATLPDAVDAAGWYWTVARPRIPALARADDLVGVTLAINGGRRGLIDRGERLAQAKKLFGIA
Other Proteins in cluster: phalp2_2991
Total (incl. this protein): 10 Avg length: 168,1 Avg pI: 8,83
Protein ID Length (AA) pI
1bUPz 110 10,31515
A0A3G1GLF3 174 8,94507
A0A3S7HFC5 174 9,26554
A0A3S7HPK5 174 8,68533
A0A3S7I6E5 174 9,26554
A0A3S7I6I3 174 8,68533
A0A3S7I6N4 174 8,68533
A0AAE8YMI2 174 8,62679
A0AAF0KHC6 174 6,83036
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_34955
4E7ip
 9 48,1% 108 3.848E-26
2 phalp2_28972
62TOB
 63 42,9% 114 8.326E-24
3 phalp2_1654
8rD3A
 4011 46,7% 109 5.554E-23
4 phalp2_33649
PKMa
 1 41,1% 102 2.977E-16
5 phalp2_37705
49Y93
 5 39,6% 106 1.054E-15
6 phalp2_10814
4695M
 103 38,0% 105 1.446E-15
7 phalp2_431
dfz
 1 35,5% 90 2.720E-15
8 phalp2_29848
3MAIs
 98 39,4% 104 4.674E-14
9 phalp2_29704
1gK2U
 1 39,4% 104 3.110E-13
10 phalp2_31763
46ZA1
 10 38,2% 94 1.886E-11

Domains

Domains [InterPro]
Unannotated
Representative sequence (used for alignment): 1bUPz (110 AA)
Member sequence: Q2NPA7 (179 AA)
1 110 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage OP2
[NCBI] 		331627 Tsukubavirus > Tsukubavirus OP2
Host Xanthomonas oryzae
[NCBI] 		347 Proteobacteria > Gammaproteobacteria > Xanthomonadales > Xanthomonadaceae > Xanthomonas >

Coding sequence (CDS)

Coding sequence (CDS)
CDS Source ID
[NCBI]
CDS Source
AP008986 [NCBI]
CDS location
range 18055 -> 18594
strand +
CDS
TTGGGCTCACCGGAGATGTCAACTGAGACTGTCGCAGCTGGACTAGGGTTCAGCGCCGAAATTGCACTACTACTCGAGGCGGGCTGTGTTCGCTACGGCCTGACCTCGCCGCTCGAAAAGAGCCACTTCCTCGCGCAAGTGGCTCACGAATCCGGCTCAGGGAAGTGGCTGGAGGAGCTCGCCAGCGGGAAGGCGTACGAAGGCCGGAAGGATCTCGGCAACACGCAGCCCGGGGATGGGGTGCGGTTCAAGGGACGCGGACTCATTCAAGTGACCGGGCGTAGCAACTACGCCCGTTACAGTGCGTGGAAGTATGGCGACACGCGGGTCGTTGCGACGCCGGGCATGCTCGCCCAGCTTCCCGACGCGGTCGACGCTGCGTTTTGGTATTGGACCGTCGCGCGCCCGCAGCTCAAGCCGCTCGCGCTGGCCGATGATGTGGTCGGCGTAACGAAGGCGATCAACGGCGGCACGAACGGTCTAGACGACCGCAGGGCCAAACTAGCACAGGCCAAGCGCCTATTTGGACTGAGCGTATGA

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
upi0000679590_model
Method AlphaFold3 (non-commercial)
Resolution -
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50
The structures below correspond to the cluster representative (1bUPz) rather than this protein.
PDB ID
1bUPz
Method AlphaFoldv2
Resolution 96.85
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50