Protein

Protein accession
K4NWI2 [UniProt]
Representative
4xP4a
Source
UniProt (cluster: phalp2_30318)
Protein name
Putative structural lysozyme
Lysin probability
100%
PhaLP type
VAL
Probability: 99% (predicted by ML model)
Protein sequence
MAVQVPTLGGPQVRSRGIGTPQVQAEPVDPTGAQLAQSGLRAADQIFQKSQEDADTAALINAETQLSNWKLNTMFNEQDGVYTRKGQNALDITNQTISLYDQQADAIGNSLTNDRQKARWKQITAGQRQSLSAELNRYEYGERQSFYDQTDAASLQAATQGATAYFNDPQQVAYYQNKGARIIAANGQRKGLPPEAVEQNIQKFNSSMASDVISRMAVDDPLKAQQYFAASSGYMTPDDQYKISKMLSTSVRQQLGSQIGASVWASGSIGSQALPNLIIQAESSGDPTAVSPKGAKGLMQLMPDTAKEMAAELNIPYSEERLTADPQYNMALGTQYLNKMLGKYGGNETLAVAAYNAGPGAVDKWVKEYGDPRTGEISNQDFIDKIPYQETRDYTSKIVGQLVGGEPASARYAAATQQINKINDPKTRKYAQDRVDDLYKAQQLEQKAAYDQAAQVVLQRGYNAVPPNMLDQLTADDQVKLQKMDEHRRKGTEPKTDYAKLQEFIDMPPAQLEELSLERDVRPYLNNADFKRVTTMYQKVKQGDLSGQGSVKAEERQLQGVMAMAGIKVGNNKDAKEPKNLERQEQFRAAYQARKDAIFQATGKQPTASEAQKIAQELLLEVRIGGTGIFSEDSMKLWEVTPEKLDKAYIDRGDIKTSDIPAQERLRIVQALRAAGQSPSEENIVAAYLERISGLGVSVQ
Physico‐chemical
properties
protein length:700 AA
molecular weight:77066,3 Da
isoelectric point:5,39
hydropathy:-0,67
Representative Protein Details
Accession
4xP4a
Protein name
4xP4a
Sequence length
680 AA
Molecular weight
74495,09290 Da
Isoelectric point
5,06739
Sequence
VREQPADTSGLALGQAALGLAGQVFQKSQEDADQAALIKAESELSDWKLGTMFNPENGVYSRKGGNALDITNQTLPSFDKQVERLGSSLTNDRQKARWQQITASQRNSLNSELNRYEFGERQNYYDEADKASINSAAAGATSYYQDPGQVAYYQNKGSRVIVANGQRKGLPAEAIEQNVQAFNSNLAVGVIDRMVSDDPLRAQQYYANASGAMLPDDRAKVEKVLGTAIRQQVGSEMARSLYNTGTPGDASLSALIIQAESGGDPSAVSPKGARGLMQLMPETAKEMAGELGMEYSEERLTADPQYNMALGNAYINKMLGRYEGNQALALAAYNAGPGSVDKWLKEYGDPRKGEISEQEFIEKIPFKETREYTSKIVGQVSQAPSSARTYADSVKWINKNVDDQDLKKFALDSLDDLKKADDLDAKATFEEAAGIVLSTGFNTVPPQVLANIPATEQAKLIRLDDLRRKGQEPETDDAKLQEFITMPTAQLAELSIDRDIRPYLNKTDFNRVLSAYQSAQKGDGATQAAQAAEYKSVQTVMTSAGILLGTSKDAQAPGNLRKRKQFENSYNQLRDAFVQKNKTDPTPAEAQSIAEQLEINIRLSGSGRFFDDQMPVWSVPAEKRGSVYVDPGDVSIEKLSPNERQRAYDLLSAQGTPVSKQTMTEAYLQILEARGLKVNR
Other Proteins in cluster: phalp2_30318
Total (incl. this protein): 34 Avg length: 696,9 Avg pI: 5,54
Protein ID Length (AA) pI
4xP4a 680 5,06739
11DtN 807 5,37097
2cTfR 564 5,21500
3LGqp 702 4,99134
3dDak 703 5,38103
3dKwP 700 5,65317
3edIP 700 5,44628
3eduR 699 5,14145
3iF9K 700 5,46043
40wpL 714 5,88093
4GkjG 705 5,07864
4TpRZ 701 5,09388
4XAPO 699 5,16123
4XTdX 713 5,91958
4XU5a 699 5,25825
4fxnt 701 4,95104
4r48W 700 5,75764
5BMs0 672 5,04596
5CjXH 699 5,25717
5jiqa 697 5,66522
6Cc5l 684 8,19137
6RYut 684 5,96817
7Ydrz 700 6,02558
7drFl 700 5,88576
7f02S 700 5,89121
7hHRW 703 5,64186
7htJn 700 5,48356
7i5SO 700 5,81465
8L3dP 700 5,39126
8hzK 690 4,98486
e64R 700 5,47947
ftPP 664 5,06858
A0A510LH58 713 6,26521
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_31894
4JkOt
 8 26,1% 691 2.782E-74
2 phalp2_27844
fq3d
 11 23,5% 625 2.135E-58
3 phalp2_31965
4UrxT
 3 26,3% 543 4.497E-50
4 phalp2_27057
2f2It
 12 25,7% 638 4.959E-47
5 phalp2_6264
6ICI7
 201 24,9% 537 1.648E-44
6 phalp2_9220
6PZZy
 9 24,2% 657 7.089E-42
7 phalp2_5719
4Jlyi
 1 27,0% 513 5.283E-40
8 phalp2_22544
1pCYm
 3 21,8% 673 1.249E-39
9 phalp2_8658
7Vsuv
 4 22,0% 716 2.713E-35
10 phalp2_17348
4B86m
 5 22,5% 686 3.227E-32

Domains

Domains [InterPro]

No domain annotations available.

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage AF
[NCBI] 		1235689 No lineage information
Host Pseudomonas putida
[NCBI] 		303 Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas putida group

Coding sequence (CDS)

Coding sequence (CDS)
CDS Source ID
[NCBI]
CDS Source
JX676771 [NCBI]
CDS location
range 11497 -> 13599
strand +
CDS
ATGGCTGTTCAAGTCCCAACTCTTGGCGGTCCTCAGGTTCGAAGCCGTGGCATTGGCACTCCTCAGGTGCAGGCCGAGCCAGTAGATCCAACTGGCGCCCAGCTTGCCCAATCAGGCCTGCGCGCTGCAGATCAGATTTTCCAGAAGTCCCAAGAGGACGCCGACACCGCAGCACTGATTAACGCCGAGACGCAGCTGAGCAACTGGAAGCTCAACACGATGTTCAACGAGCAGGACGGCGTGTACACCCGCAAGGGTCAGAACGCCCTGGACATCACGAACCAGACGATCAGCCTGTACGACCAGCAGGCCGACGCTATTGGCAACTCGCTGACCAATGACCGCCAGAAAGCCAGGTGGAAGCAGATCACTGCCGGCCAGCGCCAGAGCCTGAGTGCAGAGCTGAACCGCTATGAATACGGCGAGCGCCAATCGTTCTATGACCAGACCGACGCGGCATCACTGCAAGCTGCCACACAAGGCGCTACAGCCTACTTCAATGATCCGCAGCAAGTTGCGTACTACCAGAACAAGGGCGCGCGCATCATCGCCGCCAACGGGCAGCGCAAAGGCTTGCCGCCTGAGGCGGTCGAACAGAACATCCAGAAGTTCAACAGCAGCATGGCCAGCGATGTGATCAGCCGCATGGCCGTAGATGATCCACTGAAAGCGCAGCAGTACTTCGCGGCCTCGTCCGGCTACATGACCCCTGATGACCAGTACAAGATCAGCAAGATGCTCTCTACCAGCGTTCGTCAGCAGCTTGGCTCGCAGATCGGCGCCAGCGTGTGGGCGAGCGGCAGCATCGGCTCTCAAGCGCTGCCTAACCTGATCATCCAGGCCGAAAGCTCAGGTGACCCTACTGCCGTATCGCCAAAGGGCGCCAAAGGCCTGATGCAACTGATGCCGGACACCGCCAAGGAAATGGCCGCAGAACTCAACATCCCGTACAGCGAAGAGCGCCTGACTGCAGACCCTCAGTACAACATGGCGCTGGGCACTCAGTACCTGAATAAGATGCTGGGCAAGTACGGTGGCAACGAGACGCTGGCCGTGGCCGCATACAACGCCGGGCCTGGAGCTGTTGATAAGTGGGTGAAGGAGTACGGCGATCCGCGCACCGGAGAGATCAGCAATCAGGACTTCATCGATAAGATTCCGTACCAAGAGACCCGCGATTACACCAGCAAGATCGTTGGTCAGCTTGTCGGCGGTGAGCCTGCATCGGCTCGCTACGCAGCGGCCACCCAGCAGATCAACAAGATCAACGATCCCAAGACCCGGAAGTATGCCCAAGATCGCGTAGACGATCTGTACAAGGCCCAGCAGCTGGAACAGAAAGCCGCCTACGACCAAGCGGCTCAAGTCGTTCTGCAGCGCGGCTATAACGCGGTACCGCCAAACATGCTGGACCAGCTGACGGCAGACGATCAGGTCAAGCTCCAGAAGATGGACGAGCACCGCCGCAAGGGAACTGAGCCGAAGACCGATTACGCCAAACTGCAAGAGTTCATCGACATGCCACCGGCGCAGCTTGAGGAATTGAGCCTTGAGCGTGATGTGCGCCCGTACCTGAACAATGCCGACTTCAAGCGCGTGACGACGATGTACCAGAAGGTCAAGCAAGGTGATCTGTCTGGCCAGGGCTCGGTGAAAGCTGAAGAGCGACAGCTTCAGGGCGTCATGGCAATGGCCGGCATCAAGGTTGGCAACAACAAAGACGCGAAAGAGCCAAAAAACCTTGAGCGTCAAGAGCAGTTCCGCGCCGCCTACCAAGCTCGAAAGGACGCCATATTCCAGGCGACAGGCAAGCAGCCTACGGCATCCGAGGCGCAGAAAATTGCCCAAGAGCTTCTTCTTGAAGTGCGCATTGGTGGCACCGGGATCTTCTCAGAAGACTCCATGAAGCTGTGGGAGGTGACGCCAGAGAAGCTGGATAAGGCCTATATCGATCGCGGCGATATCAAGACCTCTGACATTCCTGCTCAAGAGCGCCTGCGCATCGTGCAAGCCCTGCGCGCTGCAGGCCAATCGCCGAGCGAAGAGAACATTGTGGCAGCATATCTGGAACGAATTTCTGGCCTGGGGGTAAGCGTCCAATGA

Gene Ontology

Description Category Evidence (source)
GO:0000270 peptidoglycan metabolic process biological process None (UniProt)
GO:0008933 peptidoglycan lytic transglycosylase activity molecular function None (UniProt)
GO:0016020 membrane cellular component None (UniProt)

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
upi0002971c81_model
Method AlphaFold3 (non-commercial)
Resolution -
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50
The structures below correspond to the cluster representative (4xP4a) rather than this protein.
PDB ID
4xP4a
Method AlphaFoldv2
Resolution 86.59
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50