Protein

Protein accession
C9DFY3 [UniProt]
Representative
53YTE
Source
UniProt (cluster: phalp2_33198)
Protein name
Putative lysis protein
Lysin probability
100%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MQLTLTQLRTIASNSALGQDVCDAVNGTLVKYQITDKWEVCAFLANIVHESGGLRFFVESLNYSADRLLVVFPKYFKTPAEAQAYNRQPEKIANRVYASRMGNGDEKSGDGWKYRGRGAIQLTGKTNYTNFGAVNTPDSVATMPKAIESAGWFWNNRGIKSIAKKQDIAAVTRAVNGGLNGLDDRTKVLNLALKTL
Physico‐chemical
properties
protein length:196 AA
molecular weight:21540,2 Da
isoelectric point:9,54
hydropathy:-0,31
Representative Protein Details
Accession
53YTE
Protein name
53YTE
Sequence length
345 AA
Molecular weight
37475,70750 Da
Isoelectric point
8,71949
Sequence
MFSGIKNWIEVAKTVSEVITEKKLLEKEGITSTMDDLKSIAVAKVNPAPVEQPQPVIEEVKPELVVVKTSKVEQKPTGPVMAAKGDPKVFELQKQLIAKGAKITADGLMGPATRKAQQQFAEKPATPDAAPAACHTASAGDCVTADLLKKLFPSNKNCDALCTALCTILPKYEINTPNRIAAFLAQCGHESGGFTVLQENLNYSAEGLRKIFPSRFATVAAAQPYHRQPEKIANKIYCDRMGNGPESSGEGYKFRGRGAIQLTGKENYSNFAKSIGKSLDETVAYCETLEGAICSAAWFWTTRKLNVCADCGDILSMTKKINGGTIGIEDRKKHYEHALYEIKKS
Other Proteins in cluster: phalp2_33198
Total (incl. this protein): 21 Avg length: 248,1 Avg pI: 7,72
Protein ID Length (AA) pI
53YTE 345 8,71949
31buQ 345 8,71492
4a0YM 298 9,04061
52kej 293 9,02411
5euME 293 8,83683
5gWyc 345 8,71492
5u7o9 345 8,80272
A0A6J5KPJ5 206 8,33288
A0A6J5KXS8 201 8,55142
A0A6J5LB81 204 5,73945
A0A6J5LGA5 204 5,97744
A0A6J5LXG9 205 5,54177
A0A6J5NJ46 212 6,43113
A0A6J5PY44 209 5,97983
A0A6J5SZJ8 207 5,33806
A0A6J5T5H9 258 5,54529
A0A6J7WPQ5 208 5,10678
A0A6J7X7B2 102 9,35883
A0A7D7F2P9 271 9,34355
A0A7D7J2T4 263 9,57357
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_38949
3NSo2
 24 40,6% 278 1.100E-72
2 phalp2_24275
3cumx
 91 49,7% 213 8.725E-71
3 phalp2_1820
3er8S
 16 40,4% 277 4.495E-68
4 phalp2_18079
3S7Lm
 1 38,8% 229 1.940E-61
5 phalp2_26325
1bAUE
 20 31,2% 237 2.153E-43
6 phalp2_4732
4TAVg
 3 32,2% 242 1.592E-35
7 phalp2_14498
4ODLg
 45 31,4% 216 1.144E-33
8 phalp2_1504
20yyy
 3 31,6% 341 2.105E-33
9 phalp2_20536
4lbpW
 253 30,1% 252 3.941E-28
10 phalp2_13511
4TJzf
 9 28,1% 249 3.624E-26

Domains

Domains [InterPro]
Disordered region
Unannotated
Unannotated
Representative sequence (used for alignment): 53YTE (345 AA)
Member sequence: C9DFY3 (196 AA)
1 345 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated

Taxonomy

  Name Taxonomy ID Lineage
Phage Delftia phage PhiW-14 (Deftia acidovorans bacteriophage phiW-14)
[NCBI] 		665032 Ionavirus > Ionavirus W14
Host Delftia acidovorans
[NCBI] 		80866 Proteobacteria > Betaproteobacteria > Burkholderiales > Comamonadaceae > Delftia >

Coding sequence (CDS)

Coding sequence (CDS)
CDS Source ID
[NCBI]
CDS Source
GQ357915 [NCBI]
CDS location
range 10749 -> 11339
strand -
CDS
ATGCAACTGACGCTGACCCAACTGCGGACCATAGCCAGTAACAGCGCCCTGGGGCAAGATGTCTGTGATGCGGTGAATGGCACCCTGGTCAAGTACCAGATCACAGACAAGTGGGAGGTGTGCGCCTTTCTGGCCAACATCGTGCATGAGTCTGGCGGTCTGCGCTTCTTTGTTGAAAGTCTCAACTACAGCGCCGACAGACTGCTGGTCGTGTTTCCCAAGTATTTCAAGACCCCGGCCGAGGCCCAGGCCTACAACCGCCAACCTGAGAAGATTGCCAACCGAGTGTACGCAAGTCGTATGGGCAATGGCGATGAGAAGTCTGGCGATGGCTGGAAGTACCGTGGGCGTGGGGCCATCCAGCTGACAGGCAAGACCAACTACACCAACTTCGGTGCCGTGAACACCCCTGACAGCGTAGCCACCATGCCCAAGGCGATTGAGTCTGCTGGTTGGTTCTGGAATAACCGAGGCATCAAGTCAATCGCCAAAAAGCAAGACATCGCAGCCGTGACCCGGGCTGTGAATGGCGGCCTGAATGGTCTGGACGATCGCACCAAGGTTCTGAACCTGGCTCTGAAAACCCTGTGA

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
upi0001b6029f_model
Method AlphaFold3 (non-commercial)
Resolution -
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50
The structures below correspond to the cluster representative (53YTE) rather than this protein.
PDB ID
53YTE
Method AlphaFoldv2
Resolution 79.74
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50