Protein

Protein accession
I3NL82 [UniProt]
Representative
1gHkc
Source
UniProt (cluster: phalp2_4061)
Protein name
Bacteriophage endolysin
Lysin probability
100%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MATASEVLRIAAGEIGYSRWTDPQPGTKYGRWYAQSHGSYYGASGVPFCAMFVSWVMSRAGQAFPGLPAAYVPYVLSAGRSRAVSTRSAKPGDIVIFNWDGGVVDHIGFIEANHGSYIQTIEGNTNNGRVARRTRAWNTIAAILRPAYNGGATSSGGGTASSGGTGRLTVDGSCGPATIRRWQQVMGTSVDGIISGQYRPDGRTWGRPALVDSCVRYGGGGSNLIRAVQRKLNLTADGLLGPATIRALQKHLGVAQDSWFGPGTARALQSRLNTGRF
Physico‐chemical
properties
protein length:277 AA
molecular weight:29315,6 Da
isoelectric point:10,37
hydropathy:-0,23
Representative Protein Details
Accession
1gHkc
Protein name
1gHkc
Sequence length
256 AA
Molecular weight
27586,44890 Da
Isoelectric point
8,37369
Sequence
MSVEDVLRVAAGEIGYTRWNDPLPGTKYGRWYAQDHGAYYGTSGVPYCAMFASWVYDQCPNDGIPGGYQAYVPYFIDQARRANALVPFNNAQPGDLICFDWDGNGVADHVGIVAARPSGNAISTIEGNTSSGNSGSQSNGGGVYARTRYRASVAAIIRTTHRATPTPTPTPTPTPINQLEVINQMKATHIVFEYGGFTSVADVLAGTWRRFPTGKEYANAMTALKRAGAIVKSWQELGGKTNHVDDPNGAFGKRIL
Other Proteins in cluster: phalp2_4061
Total (incl. this protein): 4 Avg length: 258,3 Avg pI: 9,43
Protein ID Length (AA) pI
1gHkc 256 8,37369
A0A6G6XI13 250 9,47893
A0A8F3EC74 250 9,47893
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_2684
7236j
 6 61,2% 160 6.319E-62
2 phalp2_20813
65GA0
 344 50,9% 218 2.217E-61
3 phalp2_552
ESm7
 27 57,5% 160 1.752E-53
4 phalp2_5932
67zj5
 27 40,7% 179 1.023E-35
5 phalp2_37209
21s1y
 4 38,8% 162 4.665E-30
6 phalp2_1568
7XJtL
 188 40,2% 189 8.663E-30
7 phalp2_40071
41qFE
 139 36,0% 172 4.918E-26
8 phalp2_33264
5Ekx7
 97 35,3% 164 3.629E-22
9 phalp2_29160
7s0gR
 24 39,2% 181 2.274E-21
10 phalp2_40270
2UpwZ
 7 36,2% 174 3.549E-20

Domains

Domains [InterPro]
CHAP
Unannotated
Representative sequence (used for alignment): 1gHkc (256 AA)
Member sequence: I3NL82 (277 AA)
1 256 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF05257

Taxonomy

  Name Taxonomy ID Lineage
Phage Bifidobacterium phage Bbif-1
[NCBI] 		743964 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
CDS Source ID
[NCBI]
CDS Source
GQ141189 [NCBI]
CDS location
range 1 -> 834
strand -
CDS
ATGGCGACGGCGAGTGAAGTCCTGCGCATCGCGGCGGGCGAAATCGGCTATTCCCGTTGGACCGACCCGCAGCCGGGCACGAAGTACGGGCGCTGGTACGCCCAATCCCACGGCTCATACTATGGCGCGTCGGGCGTCCCGTTCTGCGCGATGTTCGTCAGCTGGGTCATGAGCCGTGCCGGCCAAGCGTTCCCGGGACTGCCCGCCGCCTACGTGCCATACGTGCTCAGCGCGGGACGCTCCCGCGCGGTCAGCACGCGCAGCGCCAAACCCGGCGACATCGTGATATTCAACTGGGACGGCGGCGTGGTGGACCACATCGGCTTCATCGAGGCCAACCACGGCTCGTACATCCAGACCATCGAGGGCAACACCAACAACGGGCGCGTAGCACGCCGCACCCGCGCATGGAACACCATCGCCGCCATCCTGCGCCCCGCCTACAACGGCGGCGCCACGTCGTCCGGCGGCGGCACCGCATCCAGCGGCGGCACGGGCCGGCTCACGGTAGACGGCTCCTGCGGGCCGGCCACCATCCGCCGCTGGCAGCAGGTCATGGGCACCAGCGTGGACGGCATCATCAGCGGCCAGTACAGGCCGGACGGCCGGACATGGGGCCGACCCGCGCTCGTGGACTCGTGCGTGCGCTACGGTGGCGGCGGCTCCAACCTCATCCGCGCCGTCCAACGCAAGCTCAACCTTACCGCGGACGGGCTCCTCGGCCCCGCCACCATCCGTGCCCTGCAGAAACACCTCGGCGTCGCGCAGGACTCGTGGTTCGGACCCGGCACCGCCCGAGCACTCCAAAGCCGCCTCAACACCGGCAGATTCTAA

Gene Ontology

Description Category Evidence (source)
GO:0001897 symbiont-mediated cytolysis of host cell biological process None (UniProt)

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
upi0001e84ef5_model
Method AlphaFold3 (non-commercial)
Resolution -
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50
The structures below correspond to the cluster representative (1gHkc) rather than this protein.
PDB ID
1gHkc
Method AlphaFoldv2
Resolution 79.54
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50