Protein

Protein accession
R9U4A9 [UniProt]
Representative
8frnL
Source
UniProt (cluster: phalp2_40157)
Protein name
Glycoside hydrolase family 19 catalytic domain-containing protein
Lysin probability
100%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MSTIKNQTTFFSYIRRAPFGGRLTQSQIDGINVILEQWEYYKLFDRRWLANILAQIFHETGGKMQPIREANASSDAQAESRLEAALKAGKLGSVKNPYWRDGWFGRGFIQLTHRVNYDALGKRLNVNLVGNPALAMDPVISARIAIVGMAEGLFTNGAHRLSDYFNETVDDAEGARRIVNGTDKAKLIAGYHKNFLDAIEAASVPLQKTDANHALATADDVKPSASGSVKTLIGSTVGTAVASALVGVNNPWAFGVTALLLLMGGAALYMFGSGRWSVNRIKGI
Physico‐chemical
properties
protein length:284 AA
molecular weight:30817,8 Da
isoelectric point:9,57
hydropathy:-0,07
Representative Protein Details
Accession
8frnL
Protein name
8frnL
Sequence length
132 AA
Molecular weight
15114,14510 Da
Isoelectric point
9,78619
Sequence
MMDLPTFYTYVRKSPFGGRLTQEQVNGTEELLAAWKLYGDGDNRKLAYILAGVFHETGGKMVPVREGFASSDAGARRAVKKLFDQGRIKTNYALPVNGVSYYGRGRIQNTWERNYVKLAERFLFRWHLTPIC
Other Proteins in cluster: phalp2_40157
Total (incl. this protein): 3 Avg length: 181,7 Avg pI: 9,34
Protein ID Length (AA) pI
8frnL 132 9,78619
38Xtk 129 8,66424
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_14563
4WxUn
 402 34,5% 142 8.438E-21
2 phalp2_9312
7tJZH
 13 34,4% 116 1.182E-17
3 phalp2_14463
4HLl0
 13 39,0% 100 3.038E-17
4 phalp2_13642
5CmBQ
 1 33,8% 118 7.808E-17
5 phalp2_12536
16dsz
 27 34,9% 123 3.764E-16
6 phalp2_21772
3Zpin
 1 34,7% 121 8.733E-15
7 phalp2_17180
3auWc
 2 31,8% 113 2.231E-11
8 phalp2_30872
w8a7
 1 28,9% 114 6.937E-05

Domains

Domains [InterPro]
Unannotated
Unannotated
Representative sequence (used for alignment): 8frnL (132 AA)
Member sequence: R9U4A9 (284 AA)
1 132 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RR1-B
[NCBI] 		929834 No lineage information
Host Agrobacterium tumefaciens
[NCBI] 		358 Proteobacteria > Alphaproteobacteria > Rhizobiales > Rhizobiaceae > Agrobacterium > Agrobacterium tumefaciens complex

Coding sequence (CDS)

Coding sequence (CDS)
CDS Source ID
[NCBI]
CDS Source
JF974315 [NCBI]
CDS location
range 11615 -> 12469
strand +
CDS
ATGTCGACGATCAAAAACCAGACCACCTTCTTTTCCTACATTCGCCGTGCGCCCTTCGGTGGCCGTCTGACGCAAAGCCAGATCGATGGCATCAACGTCATTCTGGAACAGTGGGAATATTACAAGCTGTTCGACCGCAGATGGCTGGCAAATATCCTCGCGCAGATTTTCCATGAGACGGGCGGCAAGATGCAGCCGATCCGTGAGGCGAACGCCTCTTCCGACGCGCAGGCGGAAAGCCGTCTTGAGGCGGCTTTGAAAGCCGGAAAACTTGGTTCCGTGAAAAATCCGTACTGGCGCGATGGCTGGTTCGGACGTGGTTTCATCCAGCTCACCCATAGGGTCAATTACGATGCTCTTGGCAAGCGGCTGAATGTCAATCTCGTTGGCAATCCCGCATTGGCGATGGACCCCGTTATTAGCGCCCGCATAGCCATCGTCGGCATGGCCGAAGGGCTGTTTACCAATGGTGCCCACAGGCTTTCCGACTATTTCAACGAGACGGTGGACGATGCTGAAGGCGCACGCCGGATCGTCAACGGGACAGACAAGGCGAAGCTGATCGCCGGCTATCACAAGAATTTCCTTGATGCCATTGAGGCCGCTTCGGTTCCGCTTCAGAAAACCGATGCCAATCATGCGCTGGCGACGGCGGATGACGTCAAACCGTCCGCCAGCGGTTCGGTTAAAACCCTGATCGGCAGCACGGTCGGCACCGCAGTCGCCTCCGCCCTTGTCGGCGTTAACAACCCTTGGGCCTTCGGCGTCACGGCGCTGTTGCTGCTGATGGGCGGCGCAGCGCTTTACATGTTCGGTTCGGGCCGTTGGTCCGTCAATCGCATCAAGGGGATTTGA

Gene Ontology

Description Category Evidence (source)
GO:0004568 chitinase activity molecular function None (UniProt)
GO:0006032 chitin catabolic process biological process None (UniProt)
GO:0016020 membrane cellular component None (UniProt)
GO:0016998 cell wall macromolecule catabolic process biological process None (UniProt)

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
upi000342591a_model
Method AlphaFold3 (non-commercial)
Resolution -
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50
The structures below correspond to the cluster representative (8frnL) rather than this protein.
PDB ID
8frnL
Method AlphaFoldv2
Resolution 76.04
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50