Protein

Protein accession
gkpM [EnVhog]
Representative
4MWch
Source
EnVhog (cluster: phalp2_18218)
Protein name
gkpM
Lysin probability
99%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
VTFPVKAIARPAVLAGQRNGRLDTRILIVIPGQEGGPTVRLVEPAATAWRALCAAAKAAGHVLKASGPADSYRPYDVQERIFRQRYTTTYLPGRPSRMWNGQRWFQKPGTAAAAVPGSSNHGDAIAVDTGVERDGDPSAESIDEAALAWLLDHADEFGWSWELQSEPWHLHYFAGDVIPPAVAAFAAQPTTEETVIDMIAKNADDAARGEVRRLYLELTGEQPSVPQLADGVNTVEKSGYEALVTSIADSAAGQRFRAAQRKLLGLA
Physico‐chemical
properties
protein length:267 AA
molecular weight:28751,9 Da
isoelectric point:5,60
hydropathy:-0,26
Representative Protein Details
Accession
4MWch
Protein name
4MWch
Sequence length
249 AA
Molecular weight
27636,08800 Da
Isoelectric point
9,18128
Sequence
MAYPLRKITYPAAVAAAPNGLLPPDLLSSTPGRAGGKTVTLAVPAARSWRAMESAAAADGIDLLVSAETNSYRPYPTQESIWRQRYKRIFNPLRPRSYRWNGQTWWHWFKATAARPGTSNHGKGVGVDLVLRPGVFDWMLANGERFGWGMELVEEEWHWIFFVGDAIPAAVLAYERGLSIPALPRGNEEETDMVIANNFNDWRLLIPDTGTVIATGSPGAGRIPDATVDRASWDKLVAYFEKANRLIRA
Other Proteins in cluster: phalp2_18218
Total (incl. this protein): 4 Avg length: 267,3 Avg pI: 6,82
Protein ID Length (AA) pI
4MWch 249 9,18128
1b7Mc 276 6,17768
1lFHW 277 6,33666
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_5431
2SjN7
 2 43,2% 208 1.850E-56
2 phalp2_39004
8e3a4
 24 35,0% 220 3.379E-50
3 phalp2_29962
8rfJR
 9 42,3% 170 2.357E-44
4 phalp2_26267
LAL7
 1473 40,1% 172 1.538E-43
5 phalp2_15608
2ldH7
 2 38,9% 172 5.810E-41
6 phalp2_37797
4C1UL
 98 34,8% 227 1.317E-39
7 phalp2_36869
7lOzC
 4 32,8% 207 9.778E-35
8 phalp2_34867
49Aoq
 347 36,0% 175 5.564E-33
9 phalp2_20076
1KHYB
 11 34,1% 155 1.164E-18
10 phalp2_37710
4bUJj
 3 25,5% 219 3.933E-18

Domains

Domains
PET_M15
Representative sequence (used for alignment): 4MWch (249 AA)
Member sequence: gkpM (267 AA)
1 249 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF02557

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
gkpM
Method AlphaFoldv2
Resolution 82.64
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50
The structures below correspond to the cluster representative (4MWch) rather than this protein.
PDB ID
4MWch
Method AlphaFoldv2
Resolution 82.55
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50