Protein

Protein accession
YdAd [EnVhog]
Representative
2D5pH
Source
EnVhog (cluster: phalp2_30041)
Protein name
YdAd
Lysin probability
99%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
RTPEERGKRMINREISALYPPFGKLVTAFLGLWNSSNPTEQAGVFEGLRSFSRQGELYTQGRTTDGPPCVHKGLTRKVGTCTEHPKGSTVTNAIPGMSFHQYGLAADILFDADPIKPGLQASWNPKFPWKRLGNMSESFGLEWAGNWRFFKESPHHQRTWGLQISEAYEIHQSSGLEAVWKCLDLTRQVHGRKA
Physico‐chemical
properties
protein length:194 AA
molecular weight:21841,4 Da
isoelectric point:9,38
hydropathy:-0,61
Representative Protein Details
Accession
2D5pH
Protein name
2D5pH
Sequence length
183 AA
Molecular weight
20285,69960 Da
Isoelectric point
6,36531
Sequence
VQPIDPANLYPGFAKPLTAFIADWNHENPPDHQVGLFEGRRFPGRQLELWNVGRVTPGQACVHDGIARPLHTCPIHPLGRVVTMSPPGMGWHEFGLAADVVFDSDHRKPALQASWDARFPWDRLGKCGQDHGLEWAGAWKVFRESPHFQKKFGLQTTEAAAIYHEGGAEAVWKAATNELLLAG
Other Proteins in cluster: phalp2_30041
Total (incl. this protein): 4 Avg length: 200,5 Avg pI: 7,79
Protein ID Length (AA) pI
2D5pH 183 6,36531
4DvDR 198 6,64729
4Itg8 227 8,78454
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_39989
1NC6w
 21 32,9% 176 2.073E-31
2 phalp2_27726
6US3d
 23 35,5% 169 1.097E-28
3 phalp2_10312
1lxqG
 1 32,3% 176 1.077E-25
4 phalp2_1337
15l6q
 1516 33,0% 127 2.097E-20
5 phalp2_17936
107Iz
 2 27,0% 174 1.200E-18
6 phalp2_13115
8rf6U
 1025 31,2% 125 2.684E-17
7 phalp2_34371
4aKCB
 348 29,8% 124 4.993E-17
8 phalp2_26149
d8Lo
 162 33,0% 130 9.286E-17
9 phalp2_19594
49p7r
 66 28,7% 153 3.823E-15
10 phalp2_15634
2Dd0a
 83 31,5% 111 5.209E-15

Domains

Domains
PET_M15
Representative sequence (used for alignment): 2D5pH (183 AA)
Member sequence: YdAd (194 AA)
1 183 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF13539

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
YdAd
Method AlphaFoldv2
Resolution 92.87
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50
The structures below correspond to the cluster representative (2D5pH) rather than this protein.
PDB ID
2D5pH
Method AlphaFoldv2
Resolution 94.64
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50