Protein

Protein accession
RyUd [EnVhog]
Representative
1bkDr
Source
EnVhog (cluster: phalp2_16784)
Protein name
RyUd
Lysin probability
99%
PhaLP type
endolysin
Probability: 81% (predicted by ML model)
Protein sequence
MVAGDWVSAFTSLGWSPEGAGASAAAAPPLSSRYEIPATAGRTGGARPVDPYLALVKDTAGRHGLNPSLLAGIWDFESGGNAGAINKSSRATGLGQVMPREAGFPDRPTQQELLDPKTNAEWSARILKSGLDRYGSEDKALAAYLGAIDARGNITGAVDANGTGGNQYIRTVRERQQKYADLTGGTGPGAVNPGTRTQTGPSAGDWTDAFRKLGWSPEGGGGPGGAARAAASSAPSAPVGATTEKQAVAASWALSQLGSKAFYNLCQRFIEQAYGTGGQFGSAAAAGKALFKTADPAQADVGDLVFFRPDASNGYAGHAAIYLGNGEMVGATNAGVTRDNLLTNPYWRNLLVGFGDPPSQWSGRSGGSSTADLTKGAQQLVQTGQRAAGAAGQAVGAVGRAAAAAGSDWVAAFQQLGWQPGR
Physico‐chemical
properties
protein length:422 AA
molecular weight:42874,8 Da
isoelectric point:8,87
hydropathy:-0,31
Representative Protein Details
Accession
1bkDr
Protein name
1bkDr
Sequence length
336 AA
Molecular weight
33905,15080 Da
Isoelectric point
8,89150
Sequence
LLAAVWDFESSGNPGAINKSSGATGLGQVMPRERGFPDRPTQRELLDPATNAEWSARILKSGLDRYGNEDKALAAYLGAIDARGNITGAVDANGTGGNQYIRTVRERQQRYTGGGAPGPATPPAASAPAPAPAPAWWTALASSDAGGGARGRGAPAGDAGGAATAPIGAAPVKQAVAASWALANLGSKDFYNLCQRFIEQAYGTGGQYGSAAAASKALFKTADPAQADVGDLVFFRPDASNGYAGHAAIYLGNGEMVGATNAGVTKDNIFTNPYWKNLLVGFGDPPDAWKGRPSSGDLMKGAGQLVGNAKAAVQGAVGATAGAAPAWWSAVTGGRS
Other Proteins in cluster: phalp2_16784
Total (incl. this protein): 2 Avg length: 379,0 Avg pI: 8,88
Protein ID Length (AA) pI
1bkDr 336 8,89150
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_31603
4tgt3
 10 28,6% 304 2.790E-15

Domains

Domains
Unannotated
Unannotated
Representative sequence (used for alignment): 1bkDr (336 AA)
Member sequence: RyUd (422 AA)
1 336 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

No tertiary structures available for this protein.

The structures below correspond to the cluster representative (1bkDr) rather than this protein.
PDB ID
1bkDr
Method AlphaFoldv2
Resolution 69.52
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50