Protein

Protein accession
RDM4 [EnVhog]
Representative
4Jgp2
Source
EnVhog (cluster: phalp2_27400)
Protein name
RDM4
Lysin probability
87%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
IAQLVIKGVVIDPIRGATYYHANYVKPKWSLEKKYLGEIGLHKFYK
Physico‐chemical
properties
protein length:46 AA
molecular weight:5349,3 Da
isoelectric point:9,70
hydropathy:-0,15
Representative Protein Details
Accession
4Jgp2
Protein name
4Jgp2
Sequence length
41 AA
Molecular weight
4632,10130 Da
Isoelectric point
4,77171
Sequence
MAGTVTDISEGATHYHATYVNPYWADDMTVVLEVGQHIFYK
Other Proteins in cluster: phalp2_27400
Total (incl. this protein): 31 Avg length: 48,0 Avg pI: 7,91
Protein ID Length (AA) pI
4Jgp2 41 4,77171
14flo 35 5,76861
1AxFg 53 6,28170
1UIdv 43 7,02924
1tiX 32 8,49115
2BGlI 57 4,71953
2QIH2 48 6,92165
2WzA1 57 6,43965
3KDgA 44 10,10956
3ZiWv 64 8,93933
48j8V 69 8,04625
4BoRQ 55 9,05073
4PJzm 36 6,43391
4n7yo 48 9,16981
4rylk 41 9,87058
4tAl4 47 7,06051
4v8jI 39 11,39506
58NE3 48 9,16981
5BRRB 48 9,16981
5CgiB 48 9,16981
5FiuK 38 9,81636
5clJv 48 9,16981
5qyXQ 47 6,26379
5x3PC 48 9,16981
5yghp 48 6,93569
6Q64f 32 11,46649
82xfb 90 5,12781
8BZ8m 55 6,29505
8EE8u 38 6,26391
sS1D 46 7,06039
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_39727
8BIeW
 10 57,1% 42 9.735E-16
2 phalp2_26182
8DQMh
 17 56,4% 39 2.352E-14
3 phalp2_6531
QDvc
 27 56,7% 37 1.592E-13
4 phalp2_32543
1rAOO
 10 51,2% 39 7.835E-13
5 phalp2_16725
Se3P
 2 43,2% 37 1.292E-10
6 phalp2_21633
2RgDW
 8 59,3% 32 3.368E-10
7 phalp2_14715
6C5tT
 15 53,8% 26 1.133E-08
8 phalp2_10830
4bo0H
 2 50,0% 30 5.612E-08
9 phalp2_31855
4D2f9
 1 46,1% 26 3.834E-07
10 phalp2_8311
8D3Ft
 1 42,5% 40 3.422E-05

Domains

Domains
Unannotated
Representative sequence (used for alignment): 4Jgp2 (41 AA)
Member sequence: RDM4 (46 AA)
1 41 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

No tertiary structures available for this protein.

The structures below correspond to the cluster representative (4Jgp2) rather than this protein.
PDB ID
4Jgp2
Method AlphaFoldv2
Resolution 87.81
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50