Protein

Protein accession
1pmkE [EnVhog]
Representative
1pmkE (this protein)
Source
EnVhog (cluster: phalp2_16824)
Protein name
1pmkE
Lysin probability
58%
PhaLP type
VAL
Probability: 99% (predicted by ML model)
Protein sequence
MPTDDQIGVPEIQSRALQRGVSDPRGQAMEAVGRIISSSGQKIAAAIQQNQNETDSLDLARARADWNTRRLNLDDSYTLEKNPAYDKWGKSYDLEAGKNVSASAALISNAKLRERFILETQDDVTRGSLTVKDRAAGIDRDKRIQEGFDAIDKNLAAAARPGVSQEDVKKIIEQSRADIDNMVATGTIAPGDAIKVRKNYMQKFAALKAAQDIQDDPKQAATWLSSPIDGRKTPHGAGDAIRNFEGFRTKPYWDVNAYRIGYGSDTITRSDGTVVKVRPGMTVTREDAERDLERRIGEFQSGIVKDVGPDKWAAVPPDAKAALISVAYNYGSLPGTVVAAIQNGNMEQVAQAVENLDANPKRRAQEAAIIRGGGIQSAAPPDYYEFLAPEDRLRLSSAAEGRWAANDTAMRDQIAIARHDMQTQINNDLSQISATGQATNLNQDDVAAVMGVPAATQWLEKRQAAATGYASIAAMDTMSGDQIEQHLQAIKPEPGDTDFALHQKTYEKAVSHAQKLEKMRIDDPARSVESSPIVVSAMQGYQPDDPQSVQKLVKARLAAQQGVGISDAVSQPVTRKEAKEIVAPIERIIDMQEATIVAATGSIKDSAQRRLAVKEMQQKAEAQIREIVQNTEKLYGPYAPRVLAYAIAESVRDKEIGNLASTVLRKMANNEKPSRVEMQGLDAAKDASLAEKGMNGQLPSPENSIKQAVEQPVQPGPKIYPRAIGRVAPDYKPPVKHFGPFAPVTDSAVEKLMANPNLAPEFDKIFGPGEAARWLPKVPQE
Physico‐chemical
properties
protein length:781 AA
molecular weight:84979,6 Da
isoelectric point:5,87
hydropathy:-0,55
Other Proteins in cluster: phalp2_16824
Total (incl. this protein): 8 Avg length: 779,4 Avg pI: 5,80
Protein ID Length (AA) pI
48lMm 666 5,56951
4ePVR 802 5,56865
4ehEr 813 6,08776
6SArr 716 5,01129
8aeu1 828 6,12141
8atnS 809 5,73678
8taPd 820 6,42141
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_2742
7vYJk
 4 22,3% 796 2.299E-45
2 phalp2_36786
6Kd3s
 4 22,1% 658 2.592E-40
3 phalp2_37856
4Maa3
 9 19,9% 833 4.152E-38
4 phalp2_4706
4LXxo
 12 21,8% 591 1.007E-25
5 phalp2_8040
5EYWu
 7 20,8% 651 1.008E-15
6 phalp2_28883
5kZo4
 2 20,7% 568 7.727E-13
7 phalp2_7602
5Hf65
 36 19,9% 701 1.619E-11

Domains

Domains

No domain annotations available.

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
1pmkE
Method AlphaFoldv2
Resolution 82.76
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50