Protein

Protein accession
5iYoG [EnVhog]
Representative
XDPM
Source
EnVhog (cluster: phalp2_10232)
Protein name
5iYoG
Lysin probability
96%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MKVALDIGHLYKRSNPGDKGALYEGIYEADFVFNYVRKAYQLLEGENGIEVYMSDPLKGILVGDYWERRRWVNERFGETDLYLQCHLNSGNGNYALVMCVLGFDYDEKVNRVRPVVPDELVEIERMYGQVLAMNTQKFLGLQVRDFDEAKDFVWSLKRGERGYDIVKQFKCPAFVYEPCFIDNTYHFENLKSGVWVEAIAKAIWRSCIEIRDRISYNG
Physico‐chemical
properties
protein length:218 AA
molecular weight:25477,8 Da
isoelectric point:5,37
hydropathy:-0,35
Representative Protein Details
Accession
XDPM
Protein name
XDPM
Sequence length
215 AA
Molecular weight
25179,63220 Da
Isoelectric point
8,75160
Sequence
MYKLKIALDIGHLYKDNQPLDKGAFYKGMYESDIVKNYMQKTYNLLEGDNRFEVYISDPYTKTLIGDYWKRREWVNKNFTENDIYIQGHLNAGKGNYGMLLAVNDLLSITLREIGYGAEIVKALQRKLKIPFKDRMDTIDKSTGIYYLKPNERGYSILTKFKCPAYILEPCFIDNDKHFDKLVNRQWTDKIAEALTEAFKIIYNTYIEKEGGKNA
Other Proteins in cluster: phalp2_10232
Total (incl. this protein): 4 Avg length: 217,5 Avg pI: 7,28
Protein ID Length (AA) pI
XDPM 215 8,75160
1NKEk 222 8,88473
XEf4 215 6,10231
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_18020
3i7QI
 12 32,0% 209 7.118E-29
2 phalp2_37744
4jsGs
 2 29,6% 179 1.027E-13
3 phalp2_35032
7JnTG
 1 24,2% 190 3.255E-08
4 phalp2_20333
2wJrv
 1 29,6% 206 3.255E-08
5 phalp2_35303
72wI1
 17 21,9% 205 5.430E-04
6 phalp2_36343
kBxJ
 714 25,1% 183 7.263E-04

Domains

Domains
Ami3
Representative sequence (used for alignment): XDPM (215 AA)
Member sequence: 5iYoG (218 AA)
1 215 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF01520

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
5iYoG
Method AlphaFoldv2
Resolution 86.49
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50
The structures below correspond to the cluster representative (XDPM) rather than this protein.
PDB ID
XDPM
Method AlphaFoldv2
Resolution 82.51
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50