Protein

Protein accession
ycmd [EnVhog]
Representative
ycmd (this protein)
Source
EnVhog (cluster: phalp2_35497)
Protein name
ycmd
Lysin probability
99%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MLMPMPRERGGGIEEFPRRNAVDPWRFVLIPPQEDSAYGLLDPHLAEEPGLPDEGLLSPANLRQAPMGEELPIPAEKPAPPFRLSDTERQRMIDRLIHREGGYVNDPRDRGGPTNYGVTQIAIDDYNRLMGMESGTLLQKPPPALSRVEAEAVLDKILSAYKFDRIHDDLLREQIFDMAVNHGPGQAVGLLQEVLNINGYLVSVDGILGPETRNTLNKLSLDADLKRRVNNDLVKRREDFYRTLIQQDPTQKGFERSWYRRARSFLLLPPPPY
Physico‐chemical
properties
protein length:273 AA
molecular weight:30995,9 Da
isoelectric point:5,41
hydropathy:-0,59
Other Proteins in cluster: phalp2_35497
Total (incl. this protein): 2 Avg length: 276,5 Avg pI: 6,67
Protein ID Length (AA) pI
20YEH 280 7,93582
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_13016
426A1
 31 37,6% 178 1.024E-31
2 phalp2_12184
6C2VC
 988 42,0% 176 4.798E-31
3 phalp2_1444
1DO8y
 138 37,6% 186 7.705E-30
4 phalp2_37851
4LyyS
 5845 35,6% 174 8.859E-23
5 phalp2_23908
1Le4q
 257 33,9% 165 4.634E-21
6 phalp2_23735
PTzZ
 309 36,1% 166 1.764E-19
7 phalp2_36696
5QHwz
 1802 32,6% 193 3.621E-18
8 phalp2_23510
6Y4uI
 354 32,5% 169 8.944E-18
9 phalp2_23756
YFA5
 85 33,1% 169 1.633E-17
10 phalp2_17816
8CpUp
 42 30,1% 196 7.348E-17

Domains

Domains
Disordered region
PG_3
Protein sequence: ycmd
1 273
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF05838|PF09374

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
ycmd
Method AlphaFoldv2
Resolution 72.82
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50