Protein

Protein accession
1gpdu [EnVhog]
Representative
1gpdu (this protein)
Source
EnVhog (cluster: phalp2_4059)
Protein name
1gpdu
Lysin probability
99%
PhaLP type
endolysin
Probability: 98% (predicted by ML model)
Protein sequence
MMTDSPDFPGEGISYIGPAYGSNAHDPANQRMLIVIHCTANDATPTEEATYAKNRRDSSPTSAHFYAGDFSPALVQGLPLSRDAWHGASHVPNQHGYAVEVTGQAYWSRSTWTADMRDIQATAKAVRLMAQRSGIPLRVLTTEQLLYFKDHQTLTNGGVCTHAQCTTVFGGTHTDPGPGFPMDLVVSLAQTGGNGTMLSAQEYALLELASERVLVLVRMIANLHEVDDRKPSEPNLLRAYLMEMMSKLDTLVSRPVSSVQLSQADIDAIAGQVALSVQSSLTNLQTDLALVMDKLRATGVTLSQ
Physico‐chemical
properties
protein length:304 AA
molecular weight:32873,8 Da
isoelectric point:5,51
hydropathy:-0,16
Other Proteins in cluster: phalp2_4059
Total (incl. this protein): 3 Avg length: 304,0 Avg pI: 5,63
Protein ID Length (AA) pI
4kDgG 304 5,81909
4kxtx 304 5,57706
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_21936
4OI93
 1 35,0% 191 1.082E-18
2 phalp2_18539
6X9wu
 16 29,1% 271 1.965E-18
3 phalp2_590
Z6PR
 9 34,3% 204 2.132E-17
4 phalp2_7739
6UXdw
 5 33,0% 203 5.201E-17
5 phalp2_12455
wuLO
 26 29,6% 199 8.985E-12

Domains

Domains
Ami2
Unannotated
Protein sequence: 1gpdu
1 304
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF01510

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
1gpdu
Method AlphaFoldv2
Resolution 76.82
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50