Protein

Protein accession
5S3qS [EnVhog]
Representative
3vd83
Source
EnVhog (cluster: phalp2_37241)
Protein name
5S3qS
Lysin probability
99%
PhaLP type
endolysin
Probability: 98% (predicted by ML model)
Protein sequence
MGVIESVVSWLEAVAADPSHGYDQVNRWGPDYDCSSLIITAWQTFGVPLKSKGATYTGNLRSAALRCGFVDVTAQVQRATGAGLKRGDILLNTKHHVATYCGNGKEVEASINERGTSRGGKTGDQTGREIFIRSYRNYPWDYVLRYPEQAETPVTTPSAPVAAPKVLWYGKVTASALNVREYPHTSAKVLGTLKRGDLVAVEENSHWYKIGGNQYVCADYVGKQATSSSISQGIDVSAYQGTIDWLKVRNSGIQFAILRGIEKSGNMDRTFETNYDGATANEVEIKGVYHYLYATNEAQAVVAANIMMDGLKGRKITIWLDLEYPALRSTGRVTEIANAYIDACKAGGYDVGVYSNLDWYKNVYRPAELHVSKFWIARYAYSGEYKESLKPNVGEVIWQWGSKGKVDGIKGNVDMDISYEGNSSAWVVTASQLNIRNLPCTVDPSCKIVGSLRRGDAVNVLQDSLWYKIQTQSIIGWCSSSYIVKNG
Physico‐chemical
properties
protein length:487 AA
molecular weight:53647,8 Da
isoelectric point:8,41
hydropathy:-0,31
Representative Protein Details
Accession
3vd83
Protein name
3vd83
Sequence length
482 AA
Molecular weight
53853,44900 Da
Isoelectric point
9,04132
Sequence
MSKIEKAVQFMEQIAADNSHGYAQDNRNGSPDYDCSSLVGTALSKAGFKVNPLSTTRTLYKQLIDCGFKEIGVNEARKRGDIFLTAGKHVVMCTDANNIVHASLNEKGTIKNGQVGDQTGKEICCRSFYTPSYKWTYHLRYVENTPTPSTIKGVDVSGYNKITDYQAVKNDGVQFAILKIIRKDLNLDKLFETHLKGFNKVNLPIIGVYNYSYATSVAKSRSDASIVVKYLKQFNMPKSTVIYMDVEDNCQKGLGQLLIDMINAYQEVIEKAGYKFGLYTGLSFWNSYIKPYKSSLKCNVEWIARYKKGYSPMQFAENPEESSKPNIGTPIEGYQYTSSGQVSGIQGSVDLNILYNTSTLSSSPVIKNIVRVDTTLNVRNKPNGDIKGKLYNGDEVDISNYQDGFYRIGINQWVSATYIQSTRGIVNANILNIRKGAGTNYADIGNIPRNTIIPLLKEKKGWYYTVYDSIGGWVSAEYIHGL
Other Proteins in cluster: phalp2_37241
Total (incl. this protein): 5 Avg length: 488,0 Avg pI: 8,36
Protein ID Length (AA) pI
3vd83 482 9,04132
4k2ZU 482 7,62475
7WU6p 494 8,35918
8s1CG 495 8,35918
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_34847
3WNFa
 8 25,1% 540 7.143E-64
2 phalp2_10422
21gLF
 1 38,6% 357 1.031E-52
3 phalp2_38322
omZS
 1 25,0% 323 8.134E-42
4 phalp2_35723
3WLH4
 2 24,3% 362 4.387E-35
5 phalp2_10110
c1k0
 16 27,8% 330 7.929E-35
6 phalp2_22772
8ond8
 4 24,1% 344 1.409E-28
7 phalp2_18916
23Hlc
 105 21,4% 401 3.049E-17
8 phalp2_9816
8nOwP
 1 19,7% 339 1.196E-15
9 phalp2_16989
7Zt3U
 14 22,5% 560 1.784E-12

Domains

Domains
Ami5
GH25
Unannotated
SH3_3
Representative sequence (used for alignment): 3vd83 (482 AA)
Member sequence: 5S3qS (487 AA)
1 482 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF01183, PF05382, PF08239

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
5S3qS
Method AlphaFoldv2
Resolution 86.97
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50
The structures below correspond to the cluster representative (3vd83) rather than this protein.
PDB ID
3vd83
Method AlphaFoldv2
Resolution 89.63
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50