Protein

Protein accession
Ydyo [EnVhog]
Representative
Ydyo (this protein)
Source
EnVhog (cluster: phalp2_38396)
Protein name
Ydyo
Lysin probability
94%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
VNHRFRKNEHDLAISVNEFVGIYLSGSHIEMRNIDPGRLESKVKQINLIKADLAVETHFNSSENPHASGFEVLYYPGSEDGKILAQCLLQSFHEYLPFRNRGVKERADLLFLSSTGCPAVIIEPFFISNDSEMMFLENYPRGKEVLALAVSQGIRAYTVIKKEAA
Physico‐chemical
properties
protein length:165 AA
molecular weight:18616,0 Da
isoelectric point:6,08
hydropathy:-0,20
Other Proteins in cluster: phalp2_38396
Total (incl. this protein): 10 Avg length: 189,3 Avg pI: 7,00
Protein ID Length (AA) pI
1nDeL 194 6,37054
2nG1O 202 5,85165
2nNyW 183 6,59192
37TYC 184 7,92956
45cFz 198 6,83201
4Itq4 191 6,90323
4Xqm8 185 5,76145
6uQ2 194 9,24265
eVKK 197 8,41224
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_39240
3QaAt
 19 36,7% 166 2.667E-28
2 phalp2_21590
2ns10
 22 38,4% 156 2.157E-23
3 phalp2_21852
4t88M
 271 30,1% 166 3.623E-22
4 phalp2_3494
4igQU
 146 35,0% 157 1.735E-21
5 phalp2_11016
4Prl3
 67 31,1% 154 2.124E-20
6 phalp2_6329
79LaP
 54 30,6% 163 9.058E-19
7 phalp2_12459
y0JW
 12 40,1% 112 2.812E-17
8 phalp2_40418
4dDiA
 1 36,2% 124 2.812E-17
9 phalp2_6479
pJ9f
 6 24,5% 171 9.797E-17
10 phalp2_7941
wIlS
 251 27,9% 154 1.828E-16

Domains

Domains
Ami3
Protein sequence: Ydyo
1 165
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF01520

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
Ydyo
Method AlphaFoldv2
Resolution 95.75
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50