Protein

Protein accession
XDPM [EnVhog]
Representative
XDPM (this protein)
Source
EnVhog (cluster: phalp2_10232)
Protein name
XDPM
Lysin probability
96%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MYKLKIALDIGHLYKDNQPLDKGAFYKGMYESDIVKNYMQKTYNLLEGDNRFEVYISDPYTKTLIGDYWKRREWVNKNFTENDIYIQGHLNAGKGNYGMLLAVNDLLSITLREIGYGAEIVKALQRKLKIPFKDRMDTIDKSTGIYYLKPNERGYSILTKFKCPAYILEPCFIDNDKHFDKLVNRQWTDKIAEALTEAFKIIYNTYIEKEGGKNA
Physico‐chemical
properties
protein length:215 AA
molecular weight:25179,6 Da
isoelectric point:8,75
hydropathy:-0,56
Other Proteins in cluster: phalp2_10232
Total (incl. this protein): 4 Avg length: 217,5 Avg pI: 7,28
Protein ID Length (AA) pI
1NKEk 222 8,88473
5iYoG 218 5,37239
XEf4 215 6,10231
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_18020
3i7QI
 12 32,0% 209 7.118E-29
2 phalp2_37744
4jsGs
 2 29,6% 179 1.027E-13
3 phalp2_35032
7JnTG
 1 24,2% 190 3.255E-08
4 phalp2_20333
2wJrv
 1 29,6% 206 3.255E-08
5 phalp2_35303
72wI1
 17 21,9% 205 5.430E-04
6 phalp2_36343
kBxJ
 714 25,1% 183 7.263E-04

Domains

Domains
Ami3
Protein sequence: XDPM
1 215
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF01520

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
XDPM
Method AlphaFoldv2
Resolution 82.51
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50