Protein

Protein accession
4ymnd [EnVhog]
Representative
4ybTO
Source
EnVhog (cluster: phalp2_13419)
Protein name
4ymnd
Lysin probability
99%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MATAQDLVELAKSQVGTKESPADSNKVKYWDYCKQHCGKDYNGQPWCAAFVTYLMTELGQWTFTSDEARFRYCPSLVTWGKNQGKWKGRSYTPVAGDIILFANKGTACHVGVVISTSGSTINTIEGNTSTSSNDNGGAVMQRQRTLGTEGSSWYILGYIANTWEDEDEVKDTDISKIAQAVWEHDINGKWANERLYLCNVMDYDTTDPTGRKKELTNHDHIKWIAAEQANTKAEVEALQADVTEIKESIEKILKAVQNDSK
Physico‐chemical
properties
protein length:261 AA
molecular weight:29154,1 Da
isoelectric point:5,22
hydropathy:-0,61
Representative Protein Details
Accession
4ybTO
Protein name
4ybTO
Sequence length
270 AA
Molecular weight
30050,02930 Da
Isoelectric point
4,72022
Sequence
MPNANELIAKAQTQIGVKESPADSNIVKYWDWYKQHTGVNLQGNPWCAAFVTWCMGEIGAWNVTSDEGRFRYCPSLVNWAKANGQWVDREDICQAGDIILFANKGEACHVGIVEARISSSQVQTIEGNTSASSNDNGGAVMRRTRNYGTVGSKWYILGFVRTPWNTLEEDDMPTAKEVAEAVWTAEINGHTASERLYLCNVMDYDKSDPTGRGKEYTNHDHIKWIAAVVSDLKDSIATLSTKLEALESKLEELELVESKDETEDTSTTDI
Other Proteins in cluster: phalp2_13419
Total (incl. this protein): 2 Avg length: 265,5 Avg pI: 4,97
Protein ID Length (AA) pI
4ybTO 270 4,72022
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_16018
3yVVm
 206 45,0% 173 8.145E-31
2 phalp2_11549
ZJ7o
 17 36,3% 179 8.410E-27
3 phalp2_22287
7C3Cm
 23 35,4% 203 2.854E-24
4 phalp2_15386
1Nzv3
 2 33,3% 183 4.471E-23
5 phalp2_8114
6H1JM
 136 35,4% 203 6.654E-20
6 phalp2_34753
3g9I4
 5 32,7% 226 4.099E-19
7 phalp2_1568
7XJtL
 188 32,9% 182 6.931E-17
8 phalp2_38841
1FUPk
 1 29,8% 191 1.265E-16
9 phalp2_552
ESm7
 27 35,6% 185 3.424E-15
10 phalp2_20992
7zazP
 46 27,7% 202 1.319E-12

Domains

Domains
CHAP
Unannotated
Representative sequence (used for alignment): 4ybTO (270 AA)
Member sequence: 4ymnd (261 AA)
1 270 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF05257

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
4ymnd
Method AlphaFoldv2
Resolution 79.90
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50
The structures below correspond to the cluster representative (4ybTO) rather than this protein.
PDB ID
4ybTO
Method AlphaFoldv2
Resolution 77.55
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50