Protein

Protein accession
4Ld5X [EnVhog]
Representative
2Vbrp
Source
EnVhog (cluster: phalp2_21648)
Protein name
4Ld5X
Lysin probability
99%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MYKSKQSYIDAIAPAAVRAGVKYGYLPSVLIAQSCLENGYGMDPECEILLEHNNMLGMKAELLNASWSDKTVWNGEKFLKDTPEYYGGKPVRIEDYFRSYVSIDQCFEDYCLFMTYGAYQKGGVPKYRDSVIGVEDPEKLISTVSRLGYATDPRYSKSVMAIILQQDLRKYDSMEAQPMLKTKKLEDRKIVDITKANAGQVPRKRTNDPKFIVVHYLGVPNADNPNLYGGGYGGHFNITRDGTIYNAANPKSAVIWHCGGKLQGSGGHSFYQICTNYNSVGIECSICYTDPTVKSPDSSSDQWYFTEETQESLVWLVSRLMDILNIPIDHVIRHYDVTGKICPNPYVRNNHTKTSWTWKEFKANLAQYRKDGTITIPGGSDPAPERNYLQKGDKGEEVRKMQEMLITCGYDCGSCGADGVFGNDSDKALRAFQTACGLMA
Physico‐chemical
properties
protein length:440 AA
molecular weight:49312,3 Da
isoelectric point:6,47
hydropathy:-0,48
Representative Protein Details
Accession
2Vbrp
Protein name
2Vbrp
Sequence length
567 AA
Molecular weight
64193,44900 Da
Isoelectric point
9,18934
Sequence
MKTSFSSEQEFIKTIAPAAQKACKRYGYLPSVLIAQACLENGYGIPSYWDNQEIKYLLQYNNMVGQKAELLTSSWYNKSVWPGKSFNKNTPEVYSGQQVTIKDNFRIFDNIEQSFCDFILFLLYASNYGYNGKPKYGKEVVNIKDPATLIKEVSGRGYATGPTYPSSVMKIVNKHNLTQYDDLSTVEASNYIPDALRNQYKTIGDNKMNITEKPIYDVTAQNRSQVPASRGNNPIQWIVIHYLGVGNADNENLYGGGYGGHYYISRAGKIYKAADPKTAVVWQCGGKLQGPNGHQYHRICTNYNSIGIENGVCYDGTWYFTQETQESLVFLVSKLMDEYGIDINHVIRHYDVTGKICPAPYVNNDNYKTSWTWNQFKANLASYRGNGGYIPSQNTDTKSSQPANAAYPATPFSVKVIVNNLNMRQGPSTNYSSNGYTGKGTFTIVKVSGDWGKLKSGTGWIYLKNPKYCTIPKVYVYNGLEYSLVFNPNYYSNKYADLKKAFGTNADKLFNHFCTYGMKEGRQAISTFNVKKYQSYYNDLQKAFGSNLPLYYKHYIEHGKKENRKAV
Other Proteins in cluster: phalp2_21648
Total (incl. this protein): 10 Avg length: 563,2 Avg pI: 8,60
Protein ID Length (AA) pI
2Vbrp 567 9,18934
1JcYH 604 8,80865
2NRnu 511 9,09618
2NRss 604 8,94758
3iiqA 612 8,91754
41lqE 581 8,26235
4L6HD 563 8,70660
81Lp3 546 8,62692
8fATe 604 8,98768
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_21762
3TRfz
 37 56,2% 391 2.067E-152
2 phalp2_38910
23s0X
 1 31,7% 494 1.299E-66
3 phalp2_32877
3ejEW
 46 27,7% 393 1.355E-34
4 phalp2_38692
MSLD
 8 28,1% 423 7.791E-31
5 phalp2_20828
6lIKR
 83 26,8% 540 9.728E-27
6 phalp2_37594
45uQn
 106 26,5% 498 1.771E-20

Domains

Domains
GLUCO
Ami2
Unannotated
Unannotated
Representative sequence (used for alignment): 2Vbrp (567 AA)
Member sequence: 4Ld5X (440 AA)
1 567 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF01510, PF01832

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
4Ld5X
Method AlphaFoldv2
Resolution 84.61
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50
The structures below correspond to the cluster representative (2Vbrp) rather than this protein.
PDB ID
2Vbrp
Method AlphaFoldv2
Resolution 83.60
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50