Protein

Protein accession
6ndmR [EnVhog]
Representative
6ndmR (this protein)
Source
EnVhog (cluster: phalp2_30607)
Protein name
6ndmR
Lysin probability
99%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MKIAIDKGHCLYGFDTSADGRSVGGFSESEYDRILGDKIINLLRANGHEVIDVTVDNGNQFSSMYGSLGARTSKANANDVDLYIAIHFNAGGGRGTEVYLAPRSYYGSDSSYNTNLGYASRVQQKMVSLGFMNRGVKTEEFYVLVNTNAHAILIETCFCDSVADKQLYDSLGADKVAKAIVEGILNISVSTSTPSISTTTPTTSNAATNSDAPFRVRKSDNSPSSQIFASGTLEGAKANCPAGYCVFDKNGTLRYSNIPQASNSKTYAEDGTFYFTTNVQIRTQPCDGYETGLCYYAGESVIYHTVILDKNGFNWIVYNRSNGQQGYMKVRDLSTGEKYGYAE
Physico‐chemical
properties
protein length:343 AA
molecular weight:37291,9 Da
isoelectric point:5,62
hydropathy:-0,36
Other Proteins in cluster: phalp2_30607
Total (incl. this protein): 8 Avg length: 269,4 Avg pI: 8,15
Protein ID Length (AA) pI
1034D 317 8,88872
10D2I 317 9,00773
1pyu0 225 8,83580
3Y9NF 303 9,61644
E5G068 216 8,07861
A0AAU8KZ58 217 7,59337
A0AAU8L113 217 7,59337
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_32076
5RDQF
 9 40,1% 254 9.519E-52
2 phalp2_2703
7cyBj
 192 45,5% 215 2.114E-50
3 phalp2_35186
67E6C
 93 32,0% 278 6.782E-33
4 phalp2_12323
7wjSB
 3 30,9% 220 7.721E-27
5 phalp2_24413
4m1OU
 1246 29,6% 243 3.430E-19
6 phalp2_32087
63Erl
 43 30,4% 220 3.430E-19
7 phalp2_11988
35NoL
 2 26,2% 255 8.309E-19
8 phalp2_23918
1NTlO
 42 27,9% 265 1.264E-15
9 phalp2_21446
82r2O
 3 25,7% 260 1.264E-15
10 phalp2_38795
1mhnb
 2 24,0% 295 1.281E-09

Domains

Domains
Ami3
Unannotated
SH3_5
Protein sequence: 6ndmR
1 343
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF01520, PF08460

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
6ndmR
Method AlphaFoldv2
Resolution 88.39
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50