Protein

Protein accession
1SpDd [EnVhog]
Representative
1SpDd (this protein)
Source
EnVhog (cluster: phalp2_6698)
Protein name
1SpDd
Lysin probability
99%
PhaLP type
endolysin
Probability: 98% (predicted by ML model)
Protein sequence
MTLSKITFIPLLLPTIFLVVSVLVWAGTVCPVPSEATVISKARVDLKFKQPDDGVKETKPLLKYKSIYSGEHWRPDENLTAFIKSIENHPLANGKARLVKYKDFGYVAKGYGTRAKHFKKNTVAEAERIMIEHLLESNKVVDRHVKVNITHHQRNALVSLVYNIGPFAFSTSKALKALNNGDIRSFKIHAFDSKHGFVCAGGRHNKGLMVRRAHELRIWEKGSYYSQLDS
Physico‐chemical
properties
protein length:230 AA
molecular weight:25984,9 Da
isoelectric point:9,84
hydropathy:-0,25
Other Proteins in cluster: phalp2_6698
Total (incl. this protein): 10 Avg length: 220,3 Avg pI: 9,77
Protein ID Length (AA) pI
1URWw 233 9,54894
1Ww8u 225 9,73184
1nrdu 216 9,84511
3R2MC 216 9,71456
3UVc4 216 9,97734
3UXCK 216 9,80282
4dFh5 225 9,69645
6CVpR 218 9,77742
YDiV 208 9,75486
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_2978
17tl3
 13 58,6% 150 1.320E-51
2 phalp2_29064
6QoSj
 5 43,1% 176 3.165E-31
3 phalp2_10624
2nrBp
 12 31,0% 161 9.747E-12
4 phalp2_2632
6RhYr
 14867 38,8% 144 3.238E-11
5 phalp2_30186
3R0K4
 1 27,8% 208 1.952E-10
6 phalp2_24955
lSG2
 2 30,4% 171 2.855E-09
7 phalp2_126
5jCCA
 637 34,6% 156 9.363E-09
8 phalp2_26035
6XV4Z
 46 34,2% 149 1.694E-08
9 phalp2_2176
3Yhf4
 930 31,7% 151 2.277E-08
10 phalp2_31105
1YRHZ
 456 35,0% 151 3.061E-08

Domains

Domains
Disordered region
GH24
Protein sequence: 1SpDd
1 230
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF00959

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
1SpDd
Method AlphaFoldv2
Resolution 73.13
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50