Protein

Protein accession
1RdtJ [EnVhog]
Representative
1RdtJ (this protein)
Source
EnVhog (cluster: phalp2_26450)
Protein name
1RdtJ
Lysin probability
99%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MSKDFINLLSSKIDNIPNFPVLKSLAIAQACLESRYGQKHFYNNIFGIKCWNVNAYAGCRIGRTSEFIDGSYQHNLSLAFQVYDSFDDSLKDYARLMNIKRYERVRNAKNYIEATQAVKDCGYATSLAYVANLRRIIEQYKLYELDNKMEDYYITPNFKMSEFICKDGTEVPEDLKIYMEIVATELQMLRNEIDKPIIITSAYRTPEYNKKVGGKPASYHLKMQAADIRVSGMKPYDVAVYAARYTNFGGFGIANSFLHLDLRPKFLIFKY
Physico‐chemical
properties
protein length:271 AA
molecular weight:31353,7 Da
isoelectric point:8,85
hydropathy:-0,32
Other Proteins in cluster: phalp2_26450
Total (incl. this protein): 6 Avg length: 263,8 Avg pI: 8,62
Protein ID Length (AA) pI
2Q3ir 275 8,60912
45CiI 284 9,43193
4iuB5 294 9,55094
4uBoA 298 9,33800
A0A976R5G1 161 5,90923
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_28304
13qfb
 5 35,6% 275 5.735E-35
2 phalp2_21235
1gIfg
 3 33,3% 216 6.335E-25
3 phalp2_28037
6Y9Dr
 202 20,0% 349 9.268E-14

Domains

Domains
GLUCO
PET_M15
Protein sequence: 1RdtJ
1 271
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF01832, PF08291

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
1RdtJ
Method AlphaFoldv2
Resolution 94.50
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50