Protein

Protein accession
3rYcQ [EnVhog]
Representative
1kDQa
Source
EnVhog (cluster: phalp2_29425)
Protein name
3rYcQ
Lysin probability
82%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MNEEKLPFSQWNPLVAEDFVKKWEGLRLKAYRCPGGVLTVGHGHTKGVKPGQTISRQEAEKFLR
Physico‐chemical
properties
protein length:64 AA
molecular weight:7294,3 Da
isoelectric point:9,58
hydropathy:-0,68
Representative Protein Details
Accession
1kDQa
Protein name
1kDQa
Sequence length
57 AA
Molecular weight
6540,19530 Da
Isoelectric point
4,37219
Sequence
MKPSQACIEFIKDWEKLRLVAYLDGGGVWTIGYGHTDYVEPGDTCTEQEAEEFLRQD
Other Proteins in cluster: phalp2_29425
Total (incl. this protein): 2 Avg length: 60,5 Avg pI: 6,98
Protein ID Length (AA) pI
1kDQa 57 4,37219
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_35600
1fedL
 106 57,8% 57 2.213E-19
2 phalp2_26644
2b0IA
 24 57,8% 57 3.870E-18
3 phalp2_18112
49WMU
 11 53,4% 58 1.188E-15
4 phalp2_4289
84eDR
 22 51,6% 62 1.516E-14
5 phalp2_30076
2VLD3
 1 51,8% 54 1.410E-13
6 phalp2_31138
26ZNc
 11 50,0% 62 2.482E-12
7 phalp2_32280
2BxU
 3 47,9% 48 6.459E-12
8 phalp2_13068
88noH
 1 62,1% 37 1.681E-11
9 phalp2_11283
6ScB5
 20 48,1% 54 3.182E-11
10 phalp2_5302
8nRf5
 20 53,8% 39 8.287E-11

Domains

Domains
GH24
Representative sequence (used for alignment): 1kDQa (57 AA)
Member sequence: 3rYcQ (64 AA)
1 57 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF00959

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

No tertiary structures available for this protein.

The structures below correspond to the cluster representative (1kDQa) rather than this protein.
PDB ID
1kDQa
Method AlphaFoldv2
Resolution 80.62
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50