Protein

Protein accession
3gRPR [EnVhog]
Representative
4kek3
Source
EnVhog (cluster: phalp2_13391)
Protein name
3gRPR
Lysin probability
98%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MKKIYLSPSNQTGNKFVTGNTNEGTVWLDIAKRTAKILEDYDCEVKVSKASQTLAARAAEAKAWGADCYIAMHSNAAGTANKGARGVEVYYCPKKGPETRLLASSVLKELSHLFKNRGLKQSDKLIDCYKPEMPSIIGECGFHDNYEDATLILENKDKIAQLYVNALANALGIMRKDAPPLPKPSTPATPTDQSTLTAGTELDLKNEPLYLSASSTVRSSTITGKYFFWGGSVVNGRIRITNAKSRVGVTGQVTGWIDHPVVVIVYKVKAGDTLSKIANQYKTTLSAILKANPGITNPDLIHVGDLIKIPVN
Physico‐chemical
properties
protein length:312 AA
molecular weight:33800,4 Da
isoelectric point:9,22
hydropathy:-0,25
Representative Protein Details
Accession
4kek3
Protein name
4kek3
Sequence length
317 AA
Molecular weight
34567,20010 Da
Isoelectric point
9,37320
Sequence
MAKKIYLSPSNQTGNSFVVGGTNEGAVWNDIAVRLQRALSEYDCEVKMAKVSNNLTTRANEAKEWGADVYIAMHSNAAGTANKGAHGVEVYYDPKKGAATKALAADILNQLATMFTSRGLRTSSTLIDCYKPSMPSVIGECGFHDNKSDAELILNNKDKIAELYCKALVKNLGLKKKEDPKPEPTPAPDTQPSADYITYTVVKGDTLAKIAARYGTTYQEIAKLSGISNPNLINVGQKLKIPVTQKSTTIEKGDIVKVIGNKYYTGATVPSWVKATEWIVYSAPKTSDRIVIHYSVDRTKAIMSPVRRSDLKLVRKG
Other Proteins in cluster: phalp2_13391
Total (incl. this protein): 12 Avg length: 300,7 Avg pI: 7,90
Protein ID Length (AA) pI
4kek3 317 9,37320
3ZKVw 309 9,45675
3ZNaa 310 9,30023
3yhJm 277 5,02260
4083j 310 9,28959
40iWV 309 9,40963
4kblj 312 9,22261
71HpD 308 9,45708
7XgG2 284 4,91699
8kShE 277 5,02601
8mf0S 283 5,07654
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_17555
5USO4
 4 36,6% 254 7.012E-49
2 phalp2_15834
4hTzG
 686 35,2% 224 1.643E-45
3 phalp2_26880
4f46L
 1 26,6% 203 1.871E-24
4 phalp2_22023
5iret
 1 28,8% 263 9.420E-23
5 phalp2_24413
4m1OU
 1246 31,9% 210 1.273E-22
6 phalp2_39442
7KnvE
 2 30,2% 321 1.406E-21
7 phalp2_1754
2GVcd
 17 26,6% 221 2.807E-20
8 phalp2_28466
1Xf2W
 2 29,1% 216 3.053E-19
9 phalp2_28161
eWBu
 1 27,2% 209 1.004E-18
10 phalp2_9307
7sfyx
 22 26,9% 249 5.966E-18

Domains

Domains
Ami3
LysM
Unannotated
Representative sequence (used for alignment): 4kek3 (317 AA)
Member sequence: 3gRPR (312 AA)
1 317 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF01476, PF01520

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
3gRPR
Method AlphaFoldv2
Resolution 86.88
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50
The structures below correspond to the cluster representative (4kek3) rather than this protein.
PDB ID
4kek3
Method AlphaFoldv2
Resolution 86.90
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50