Protein

Protein accession
5yfd0 [EnVhog]
Representative
5yfd0 (this protein)
Source
EnVhog (cluster: phalp2_5862)
Protein name
5yfd0
Lysin probability
93%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MIKGIDVAFYEPNIDWRRVRAAGNEFAFIKATQRDYEDSKFREHKVESRGFVARGPYHFYEPTVSPRIQAEFFWETVKDEPWELDYVVDIELYRSGIYHGGRFWYDFISRFQILSGKYPMIYTGYYYWNDEVKKNPVLDLNWFAEHCPLWIAAYGSQPLIPRPWTDWTYWQYSGSGLVNGVMDDYGRPTECDLDYGRGTPTPPPDTGDIPMPKYDGIVLDTATPYVNLRDNPLTGAQDIGNLYPKDVITADEVRQTDRTWLHITSINGQAATGWAAASFVEYHFIEEPNPSSEYILHVKDGVTRKFVPEV
Physico‐chemical
properties
protein length:310 AA
molecular weight:36010,8 Da
isoelectric point:4,89
hydropathy:-0,53
Other Proteins in cluster: phalp2_5862
Total (incl. this protein): 6 Avg length: 305,2 Avg pI: 5,39
Protein ID Length (AA) pI
2wOM9 237 6,09794
3nemH 306 4,93888
41vZU 270 5,81334
4M0FJ 393 4,94411
4wdkA 315 5,68438
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_6607
1p0KW
 6 31,6% 319 2.983E-49
2 phalp2_14402
4w7mj
 98 37,5% 229 3.160E-47
3 phalp2_39336
4wbHB
 21 32,6% 294 1.312E-45
4 phalp2_20360
2RVWF
 69 38,2% 204 2.441E-45
5 phalp2_39912
1jXPT
 300 36,7% 204 1.570E-44
6 phalp2_23744
UCXc
 7 30,2% 271 2.920E-44
7 phalp2_5144
1Zty9
 17 31,9% 282 1.376E-43
8 phalp2_10644
2AeOK
 60 31,9% 216 4.754E-43
9 phalp2_26214
jZqY
 82 36,3% 231 2.663E-41
10 phalp2_17115
2A8rZ
 22 30,0% 296 5.872E-40

Domains

Domains
GH25
Unannotated
Disordered region
Protein sequence: 5yfd0
1 310
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF01183

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
5yfd0
Method AlphaFoldv2
Resolution 85.35
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50