Protein

Protein accession
3YRoJ [EnVhog]
Representative
5JdDs
Source
EnVhog (cluster: phalp2_17545)
Protein name
3YRoJ
Lysin probability
99%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MNWREIPNCSYETWHTEITEAGGPPMLAAKVSYESAIPMTALCLAMLHAESSYATDFNANKPQNKNPLNLRPRGGAGYLEFVSYADCIRNWRLRLLDPDYAYAHTTTIQDLVHVYAPSTDGNNETAYVASIDRDLARWGIVQEASPMANIYGLVPYPQVVTSHLPASNPFVKTSGAPDIPDAMFWHIMVGSLKGTDGWFHMGKAATAYGIGVASTDGPALAGVIYEWIKPRTGWYGESSGPAIAPYGDGQKFVLEVGASSVNRRSKAIEISGTPDTPLDDKARDAIANMTAYWADQKQIPWETFPMVPGTQRSFVIWHNEITGLAFKTCPGRVVMAETSALIERTRQVLKRYQTSASPPIEPTPEPPPIEPPIEPFPGFTHGLRTGTDQHVGNITYQFVSRLVTVRRGRQAPGYDRPGGTKRVTLTAGTKIRSAFIADIDGKQYLWDDGGTVYSRSPWTPKLTLQRLK
Physico‐chemical
properties
protein length:468 AA
molecular weight:51550,8 Da
isoelectric point:7,15
hydropathy:-0,35
Representative Protein Details
Accession
5JdDs
Protein name
5JdDs
Sequence length
485 AA
Molecular weight
53003,54470 Da
Isoelectric point
5,23933
Sequence
MSGSGADRTPDSPWRATGDTSPEAFRAELAGSPVAGEADALYDDASPYQRLYLAHSKAENDHDRLGILIDPGMHNNLALRPRGYPEELGARNGFAVFPRYVDCLAAWKRRLTDPALPYINTTTMLEYCQVYNPSGDTHPVTGIPNRSEVYCDRLLATINRLPEQGDPMPELEFGRVPPPPVAVRDILAPGVRRAGDGWNAMNRDRRNFGVVYHRTVGRSIAGTGQWFRNPGSGLTHYGVGSMPPDAGPDGAIYQWVDPRTRVSPWASGPWENPPGDGRALVEKYGVEAINGDLIAIEISGLYADPISGTTKDAIAAISAYWADQAQVPHTDYPINPGTGLTFTYWHSEFQAHKPCPGDVIRRETTDIIDRTRAILAAYQTGQAGETPVYVPLDPPPDVADWDGTDRTIGRALAWAIARRFTARRPTPVYRYADRASGQVRAPLLVGEEFDSLYWLESGGEPWVITKTGARIPVADATPDVAFALG
Other Proteins in cluster: phalp2_17545
Total (incl. this protein): 12 Avg length: 492,1 Avg pI: 6,36
Protein ID Length (AA) pI
5JdDs 485 5,23933
13lDN 483 6,02530
36fIH 489 7,19266
5Dmmf 467 8,15307
5IYkr 516 7,18709
6PH4D 543 6,12528
6PUJI 520 6,02558
6SC7p 515 6,14688
80BfM 511 5,78350
8donw 454 5,52108
8dp72 454 5,77407
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_2652
6UYTv
 16 35,0% 397 4.717E-118
2 phalp2_3164
8a6Ll
 13 41,6% 317 4.929E-105
3 phalp2_10271
19xz1
 1 29,1% 350 1.109E-52
4 phalp2_14885
e6TA
 2 23,7% 518 2.762E-52
5 phalp2_14309
3OKla
 2 24,1% 393 7.615E-31
6 phalp2_20525
4gVTJ
 4 22,5% 350 2.709E-26
7 phalp2_267
6x5rd
 2 22,2% 517 5.685E-18
8 phalp2_33798
1fOHs
 1 23,2% 448 2.238E-16
9 phalp2_35842
4HUkB
 9 23,4% 332 3.960E-07

Domains

Domains
Unannotated
Unannotated
Unannotated
Representative sequence (used for alignment): 5JdDs (485 AA)
Member sequence: 3YRoJ (468 AA)
1 485 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

No tertiary structures available for this protein.

The structures below correspond to the cluster representative (5JdDs) rather than this protein.
PDB ID
5JdDs
Method AlphaFoldv2
Resolution 88.13
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50