Protein

Protein accession
3Ndwq [EnVhog]
Representative
1LYqI
Source
EnVhog (cluster: phalp2_8581)
Protein name
3Ndwq
Lysin probability
99%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MATDRRTVPGNSAGAMNGDGSRKALLHTTEGTTVAGAIAAYRAHNSWPHRTVDCRRRIIVEHLPLAAAARSLQNLPGGADQTNRDGDVLIQYELVGSATNPASIGDPDDLDWFGRVVLGPDCARMGIPLTSTVRWVAYPASYGNAPQRLSLAAWDAYSGVLGHQHAPDNVHGDPGAINIDRILTAARGDAPFMALTDDQQLELLRKVREIWAETAANPADASECRLKDTTIRVRELHERATDTTPPAG
Physico‐chemical
properties
protein length:248 AA
molecular weight:26626,4 Da
isoelectric point:5,88
hydropathy:-0,38
Representative Protein Details
Accession
1LYqI
Protein name
1LYqI
Sequence length
254 AA
Molecular weight
27938,99960 Da
Isoelectric point
6,54520
Sequence
MARIAGFDWVPAPVPGLPYRDDDNAWKILWHSTETRPHPGAAAALSRIHRNPPQLWVDVYNRERVQGIDTALAGRALKASPNVETNRDRVIQIELIGYAADMHRLTDEQLDWLATAVVQPIIAHHPVPNRYLQCQKIGEGGNTASPPSKIRLSAPAWDNYSGHLGHQHAPRPNAHLDPGGLNLERICRTAYDGAPTITPGDEDVSYSKWTEADKRAFWADFKVFGAPVITGSQVASTSDKQTNLGDVINVIKGS
Other Proteins in cluster: phalp2_8581
Total (incl. this protein): 3 Avg length: 245,3 Avg pI: 5,83
Protein ID Length (AA) pI
1LYqI 254 6,54520
7CBtW 234 5,04812
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_25326
8oxUr
 15 34,1% 252 4.696E-43
2 phalp2_38561
1P0R1
 3 38,9% 190 3.533E-38
3 phalp2_29340
SlSu
 7 34,3% 195 3.683E-31
4 phalp2_21561
2crPa
 1 35,3% 201 3.830E-29
5 phalp2_16683
uhth
 1 34,4% 186 9.950E-27
6 phalp2_37893
7G9at
 52 27,6% 221 5.460E-25
7 phalp2_18777
16UHp
 8 29,7% 168 1.869E-24
8 phalp2_1976
4Eexl
 7 34,3% 160 8.687E-24
9 phalp2_17398
4MkXg
 4 31,0% 161 1.173E-21
10 phalp2_25295
8aJjF
 2 27,8% 190 3.382E-20

Domains

Domains
Unannotated
Disordered region
Representative sequence (used for alignment): 1LYqI (254 AA)
Member sequence: 3Ndwq (248 AA)
1 254 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
3Ndwq
Method AlphaFoldv2
Resolution 86.33
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50
The structures below correspond to the cluster representative (1LYqI) rather than this protein.
PDB ID
1LYqI
Method AlphaFoldv2
Resolution 79.90
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50