Protein

Protein accession
3vd83 [EnVhog]
Representative
3vd83 (this protein)
Source
EnVhog (cluster: phalp2_37241)
Protein name
3vd83
Lysin probability
99%
PhaLP type
endolysin
Probability: 97% (predicted by ML model)
Protein sequence
MSKIEKAVQFMEQIAADNSHGYAQDNRNGSPDYDCSSLVGTALSKAGFKVNPLSTTRTLYKQLIDCGFKEIGVNEARKRGDIFLTAGKHVVMCTDANNIVHASLNEKGTIKNGQVGDQTGKEICCRSFYTPSYKWTYHLRYVENTPTPSTIKGVDVSGYNKITDYQAVKNDGVQFAILKIIRKDLNLDKLFETHLKGFNKVNLPIIGVYNYSYATSVAKSRSDASIVVKYLKQFNMPKSTVIYMDVEDNCQKGLGQLLIDMINAYQEVIEKAGYKFGLYTGLSFWNSYIKPYKSSLKCNVEWIARYKKGYSPMQFAENPEESSKPNIGTPIEGYQYTSSGQVSGIQGSVDLNILYNTSTLSSSPVIKNIVRVDTTLNVRNKPNGDIKGKLYNGDEVDISNYQDGFYRIGINQWVSATYIQSTRGIVNANILNIRKGAGTNYADIGNIPRNTIIPLLKEKKGWYYTVYDSIGGWVSAEYIHGL
Physico‐chemical
properties
protein length:482 AA
molecular weight:53853,4 Da
isoelectric point:9,04
hydropathy:-0,39
Other Proteins in cluster: phalp2_37241
Total (incl. this protein): 5 Avg length: 488,0 Avg pI: 8,36
Protein ID Length (AA) pI
4k2ZU 482 7,62475
5S3qS 487 8,40553
7WU6p 494 8,35918
8s1CG 495 8,35918
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_34847
3WNFa
 8 25,1% 540 7.143E-64
2 phalp2_10422
21gLF
 1 38,6% 357 1.031E-52
3 phalp2_38322
omZS
 1 25,0% 323 8.134E-42
4 phalp2_35723
3WLH4
 2 24,3% 362 4.387E-35
5 phalp2_10110
c1k0
 16 27,8% 330 7.929E-35
6 phalp2_22772
8ond8
 4 24,1% 344 1.409E-28
7 phalp2_18916
23Hlc
 105 21,4% 401 3.049E-17
8 phalp2_9816
8nOwP
 1 19,7% 339 1.196E-15
9 phalp2_16989
7Zt3U
 14 22,5% 560 1.784E-12

Domains

Domains
Ami5
GH25
Unannotated
SH3_3
Protein sequence: 3vd83
1 482
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF01183, PF05382, PF08239

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
3vd83
Method AlphaFoldv2
Resolution 89.63
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50