Protein

Protein accession
3aMd2 [EnVhog]
Representative
3aMd2 (this protein)
Source
EnVhog (cluster: phalp2_12958)
Protein name
3aMd2
Lysin probability
99%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
VKTRFDERAPIVMAELMEKFEFSAVQAAGVLGNIGHECSGFLHLREIGQKEGRGGYGWCQWTGPRRRSFLAWCDRMKLDWHTDEANMSYLVHELETDHSSTVAAMLKAQTIAAAARAFERNFERAGIPNYASRDKWAARAMRAYQERQKEQEYEEIPIA
Physico‐chemical
properties
protein length:159 AA
molecular weight:18257,4 Da
isoelectric point:6,58
hydropathy:-0,58
Other Proteins in cluster: phalp2_12958
Total (incl. this protein): 55 Avg length: 190,1 Avg pI: 8,69
Protein ID Length (AA) pI
11Hys 230 9,49221
13g6Q 151 9,87270
1NMOA 210 9,51710
1NSsK 248 9,40357
1NTo4 211 9,74506
1XCA7 226 6,90585
1gzjS 205 9,73068
1kLbe 160 8,76121
1lyHM 185 9,49183
1rIb7 212 7,82100
1rvYe 190 10,09854
2DvC8 150 7,84498
2EWhE 154 7,82126
2FmmN 154 6,29454
2OQmz 154 6,58988
3XTLG 228 9,73455
3dMtN 210 9,70799
3djxl 206 6,42152
3gmCT 207 9,36585
440jb 170 9,80856
4AKQE 153 6,58022
4LAwN 176 9,71237
4T9Az 153 6,82559
4XJLu 152 6,97098
4ddGE 215 10,36176
4eREt 211 9,64358
4nNVE 184 10,19833
4nO2s 152 8,32875
4tsGX 235 9,70876
5Ihq9 151 6,43039
5kmA3 197 10,04484
6DP5u 174 5,55547
6TLHt 195 7,74604
6WwT3 152 6,90749
7H1m 158 6,96877
7ZWOV 198 8,96551
7eldI 206 9,20978
7rMbM 230 9,55565
7svaW 182 10,22676
7vM1i 220 9,03578
7wTXn 171 9,86922
7wkPA 206 9,59736
7xGEw 221 9,60871
7z5yL 177 10,48270
7zg4D 145 9,37830
870OI 152 6,90749
8dpOQ 197 9,18392
8dpSJ 204 8,60532
8fhPY 209 9,25361
GJjy 194 9,42336
jDlR 258 9,73281
jDty 252 9,23473
jk2n 201 8,90516
mPJv 154 7,82770
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_17396
4LvTH
 16 49,6% 145 7.779E-68
2 phalp2_6943
2SsmN
 26 44,4% 153 5.349E-64
3 phalp2_10002
6WGZx
 2 40,5% 143 5.735E-48
4 phalp2_3650
7CO5Q
 3 34,1% 126 1.004E-30
5 phalp2_17965
18oLJ
 3 28,4% 158 1.883E-30
6 phalp2_40604
7HTPb
 1 30,5% 131 8.296E-23
7 phalp2_5269
8e5oF
 72 32,2% 124 1.124E-19
8 phalp2_29653
8teHL
 1 26,4% 121 1.006E-18
9 phalp2_15086
757b
 5 31,3% 137 3.141E-17
10 phalp2_16459
6GLbk
 3 25,1% 159 2.798E-16

Domains

Domains
Phage_lys2
Protein sequence: 3aMd2
1 159
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF18013

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
3aMd2
Method AlphaFoldv2
Resolution 96.60
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50