Protein

Protein accession
1rb3d [EnVhog]
Representative
4Bope
Source
EnVhog (cluster: phalp2_19675)
Protein name
1rb3d
Lysin probability
99%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MKKRTKTTLGVVHVTATPADMNLTSASLRSMHAIRGFSDIGYNEWINRKGKLILGRGVEFIGAHVRGYNSISYGIALEGGRNGFDITDAQMRTLEKRMGELSKRYPKIKWCGHRDLSPDGDGDGVIEPHEHTKACPQFDVIPWAKARGLPVADIKGVWDHKKKHGAPDGRDAWLQRLLAGLGYPVGPIDGIVGGATRKAIKLFQDAHGLRKTGNFDKITVAKLRALAEQGGAVKIAAVPEALNKPLVKSGGFIERVATISASGGAIYSAAFGDYRTTLVLVGAIIILSVLGLLFHQRIIKAVKEIKLAVEENGL
Physico‐chemical
properties
protein length:314 AA
molecular weight:33928,0 Da
isoelectric point:9,82
hydropathy:-0,12
Representative Protein Details
Accession
4Bope
Protein name
4Bope
Sequence length
222 AA
Molecular weight
24429,68410 Da
Isoelectric point
9,60445
Sequence
MDIGVKEITQWHKKRGWRTVGYNFVIRRDGTVENGRGVSEVGAHVAGFNSKSVGVCMVGGVDAKNAPEDNYTDPQWGSLLLLVAHLVAIYPKAQVRGHRDFPKVHKACPCFDAIAWARKNNFPTEGGEVKPKTTTVKKPAAEKPATGKPDIHAVMRPGDRSEGVRYLQVKLNARHYNSGPEDGWWGKKTTLAVMELKRENGLGKDGSITLAQVDACPYRVVK
Other Proteins in cluster: phalp2_19675
Total (incl. this protein): 30 Avg length: 241,0 Avg pI: 8,43
Protein ID Length (AA) pI
4Bope 222 9,60445
1Qu8m 237 9,63224
1gxyk 242 9,37050
1ieku 224 9,06040
1ifSi 224 8,35841
1lL6T 240 8,52396
1pCTD 241 9,47726
2Lp49 215 7,00912
3QyCx 223 9,29861
3VfWm 248 6,65303
3usXF 291 8,30329
4AU0p 339 9,73984
4Bv33 220 9,66363
4CE5B 265 6,70765
4U2yO 247 6,90863
4YKk7 258 8,46807
5IOhI 201 9,21526
6RAds 246 8,88299
7cupv 228 6,70657
7dCji 246 8,47748
7kS47 246 8,77416
7koLJ 246 9,44502
7mCjn 238 6,59579
7nWHJ 248 6,96627
7sFzG 244 9,15014
aKni 246 7,74837
scMp 252 6,53162
A0A2Z2U7X2 163 8,88505
A0A7H0XA90 175 9,03004
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_25618
48uUY
 31 36,6% 224 1.055E-43
2 phalp2_36521
1qwup
 277 32,0% 215 6.433E-34
3 phalp2_28171
8yYQh
 287 39,1% 148 4.187E-33
4 phalp2_2920
NQqI
 114 27,0% 218 1.227E-28
5 phalp2_15057
7s7pP
 172 31,4% 197 1.197E-23
6 phalp2_37752
4kTIO
 51 27,6% 217 2.641E-22
7 phalp2_26274
RjMA
 376 27,3% 223 2.708E-20
8 phalp2_15742
3xGp4
 1 23,6% 199 3.123E-15
9 phalp2_37317
7ZZsG
 35 25,1% 219 4.237E-15

Domains

Domains
Ami2
PG_1
Representative sequence (used for alignment): 4Bope (222 AA)
Member sequence: 1rb3d (314 AA)
1 222 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF01471, PF01510

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
1rb3d
Method AlphaFoldv2
Resolution 77.66
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50
The structures below correspond to the cluster representative (4Bope) rather than this protein.
PDB ID
4Bope
Method AlphaFoldv2
Resolution 84.70
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50