Protein

Protein accession
3VKDd [EnVhog]
Representative
3VKDd (this protein)
Source
EnVhog (cluster: phalp2_17255)
Protein name
3VKDd
Lysin probability
99%
PhaLP type
endolysin
Probability: 98% (predicted by ML model)
Protein sequence
MSIIINGPAETLTCKYCGRDYLSRGKKDPGYCKECERKMKGDTAPISGGDEGFDKVENYVQMAIRIANDNTHGYSQANRNGYPDYDCSSLVCNAVQNSGIPVMDKGASYTGNMRNAFMACGFVPVSVNLANCAGMERGDILLNDQSHTAIYIGNGQIVQAGGSDGHPEPGDQTGREIQVMRYYNFPWSIVLRYPHNTQTTDGINPVVNPDILPYEDPTHINHEDYPYIMRYGDWGKEVLEIQKKLKALGYYKGEADGKFGDQTMAAVMQFQERNRLLMDGEVGPLTKAALDERYDEVEDKVTGVVELGQIVEFLGGKARVSANANFGMSYNPGKVKITAVRLGSKHPYHVSPMQGGSDAYGWVDGSQIKGE
Physico‐chemical
properties
protein length:371 AA
molecular weight:40807,3 Da
isoelectric point:5,37
hydropathy:-0,54
Other Proteins in cluster: phalp2_17255
Total (incl. this protein): 14 Avg length: 413,6 Avg pI: 6,32
Protein ID Length (AA) pI
21APx 368 5,36659
21nhW 374 6,27823
21pkt 378 5,54859
21yJQ 419 8,85346
2368s 508 6,69452
23MKN 364 5,58690
23uqJ 508 7,12388
24I2g 352 4,86845
24J2i 419 8,60435
24mRL 368 5,11627
3TJ1y 351 4,75779
3isMb 502 6,69259
3iz17 508 7,62986
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_2108
3dVmz
 7 42,6% 333 5.019E-85
2 phalp2_20113
2363R
 12 43,9% 248 6.446E-79
3 phalp2_36427
10262
 294 49,6% 250 1.583E-75
4 phalp2_22955
3fPKW
 30 36,3% 316 5.174E-57
5 phalp2_33777
19alW
 272 27,7% 303 3.426E-21
6 phalp2_38535
1GI7Z
 55 28,0% 278 3.742E-19
7 phalp2_31731
3P98Z
 2 27,6% 235 2.227E-12

Domains

Domains
Unannotated
Unannotated
Unannotated
Disordered region
Protein sequence: 3VKDd
1 371
Legend: EAD CBD Linker Disordered Unannotated

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
3VKDd
Method AlphaFoldv2
Resolution 68.30
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50