Protein

Protein accession
1gDLZ [EnVhog]
Representative
3PD8H
Source
EnVhog (cluster: phalp2_13320)
Protein name
1gDLZ
Lysin probability
99%
PhaLP type
endolysin
Probability: 98% (predicted by ML model)
Protein sequence
LATLAQLNDFISYLNDQWNFMTVNGHVYGQPYVWGAQHTQLTPSNYISVINNREDDALNRQRAKAYCKRLFDAGATVLYAYDCSGLGMYFWQNVEHEYPGDKTADGMMNSCTLYREEPKRGWWVFKCNSTGHAYHIGYMVDNTHVVEAYGRSEGVIRTVFSKSIWQKWGIPKILKEVIPAPGDPGHTWVHFMSNYLWASGGNYFFPPH
Physico‐chemical
properties
protein length:208 AA
molecular weight:23936,7 Da
isoelectric point:6,81
hydropathy:-0,44
Representative Protein Details
Accession
3PD8H
Protein name
3PD8H
Sequence length
239 AA
Molecular weight
26843,78100 Da
Isoelectric point
8,63878
Sequence
MATLNDFINYLEEQVKNHSIYVWGAQGQTKSAITEEWIRSRETSKANANRAIAFWKKQIAAGYGDVLRAFDCSGLAMYFLQNVHKIYKNDNSSNGQMKDYCTSITKSQLKRGDWVFRVYTSGRAYHVGYVVDDALNVIEAKGRDDGVVKRSLNASGTSYWNAFGRPKIFANEIDGGDEEVKVKVKGGTVNVRKEPNTTSEILGVARKGETYELGGFYPIEYKGQKAYISARDDLTELVE
Other Proteins in cluster: phalp2_13320
Total (incl. this protein): 22 Avg length: 238,1 Avg pI: 8,17
Protein ID Length (AA) pI
3PD8H 239 8,63878
1abts 245 9,12294
1jHOP 205 7,46514
2oFqQ 229 9,49995
3TEnK 238 6,94944
3ZAR9 252 8,86680
3ZEQ4 234 8,50836
3Zqp5 256 8,97601
3ZsKp 252 8,50823
3dP1A 242 9,14305
3fM5p 252 8,02285
3j1zn 240 6,33137
40Yno 236 8,02988
4JZDU 239 8,05373
4k5Qq 234 5,71223
5T3Ar 244 9,03287
62vxG 241 9,10805
6iUta 242 9,10663
7DNOX 234 7,54335
7Jxqp 271 8,76759
8b7o2 205 7,47276
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_21765
3WyXw
 205 39,2% 265 2.838E-67
2 phalp2_31451
3pidJ
 11 46,3% 166 1.995E-43
3 phalp2_12762
8brfm
 10 35,0% 157 3.745E-30
4 phalp2_11077
4Zv00
 3 36,9% 168 1.851E-27
5 phalp2_40165
8lvEw
 22 33,1% 157 6.389E-27
6 phalp2_34052
89HlW
 41 33,3% 168 2.203E-26
7 phalp2_25513
3gVvd
 45 37,4% 171 2.614E-25
8 phalp2_15936
4JJEp
 1 24,2% 239 4.277E-22
9 phalp2_32200
6Xp2c
 36 29,1% 151 6.962E-14
10 phalp2_23391
5URxG
 99 24,7% 178 1.906E-12

Domains

Domains
NLPC_P60
SH3_3
Representative sequence (used for alignment): 3PD8H (239 AA)
Member sequence: 1gDLZ (208 AA)
1 239 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF00877, PF08239

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

No tertiary structures available for this protein.

The structures below correspond to the cluster representative (3PD8H) rather than this protein.
PDB ID
3PD8H
Method AlphaFoldv2
Resolution 89.12
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50